In the process of randomly mutagenizing a recombinant pBR322 clone with transposon TnS, a high copy number plasmid mutant, pLO88, has been isolated. The copy number phenotype of pLO88 is observed only at elevated temperatures, >37C, and is due to the precise position of a TnS insertion. Nucleotide sequence of the TnS-pBR322 junction reveals that TnS-88 has inserted into an open reading frame that codes for a 63 amino acid protein previously shown to negatively regulate pBR322 plasmid copy number. By deleting portions of the TnS it is shown that the copy number phenotype is due not only to the insertion of TnS in pBR322 but also to the requirement that some TnS sequences remain intact. It appears that an outwardly directed TnS promoter inlitiates the synthesis of a transcript (RNA X) that interferes with the normal repressor RNA (RNA I)-primer RNA (RNA II) interaction at elevated temperatures.Initiation of DNA replication for ColEl plasmids depends on the formation of an RNA primer by the action of RNA polymerase and RNase H. Synthesis of the primer precursor transcript (RNA II) is initiated 555 base pairs (bp) upstream of the origin of DNA replication and this then forms a persistent hybrid with the template DNA near the origin of DNA replication. RNase H cleaves the hybridized transcript at the origin and this processed RNA II is used as a primer for DNA synthesis by DNA polymerase 1 (1-4). Regulation of the promoter for RNA II appears to be sufficient to control plasmid copy number (5). Primer formation is inhibited by a plasmid-specified 108-nucleotide repressor RNA, RNA I (6-8). RNA I synthesis starts 445 bp upstream from the origin of replication and proceeds in the opposite direction from RNA II synthesis. RNA I terminates near the site where RNA II synthesis starts and is therefore a complement of RNA II. When RNA I binds to RNA II, primer formation is inhibited (7, 9). Point mutations that affect formation and structure of RNA I will also affect RNA II and these have