The biogenesis of membrane oligomeric complexes is an intricate process that requires the insertion and assembly of transmembrane (TM) domains into the lipid bilayer. The Oxa1p family plays a key role in this process in organelles and bacteria. T he biogenesis of membrane oligomeric complexes is an intricate process that requires the membrane targeting of subunits, their insertion into the lipid bilayer, folding with cofactors, and the assembly into a functional structure. Numerous studies in bacterial or eukaryotic cells have demonstrated that most membrane proteins insert at the translocon site and that this process is driven by hydrophobic transmembrane (TM) domains (1, 2). However, very little is known about the lateral exit of TM domains from the site of insertion into the lipid bilayer and about the mechanistic details of subunit assembly into functional complexes. The mitochondrial respiratory chain enzymes are complexes composed of numerous nonidentical subunits (Fig. 1). Their biogenesis requires the participation of nucleus-encoded factors that are not intrinsic components of the complexes and are imported into mitochondria by using a sophisticated translocation machinery (3-5). Most of these proteins are conserved through evolution and it has been shown that mutations in the genes encoding subunits of the respiratory complexes or assembly assisting proteins are the direct cause of several human neurodegenerative pathologies (ref. 6, for review).Oxa1p, a membrane protein conserved from bacteria to eukaryotic organelles, is a key component of the insertion machinery of membrane proteins. The Escherichia coli homologue YidC interacts with the Sec translocase and mediates the insertion of a subset of proteins into the bacterial membrane (7,8). In yeast mitochondria, the absence of Oxa1p leads to a complete loss of respiration associated with severe defects in the insertion and assembly of subunits of the Cox and ATPase complexes and with minor defects in the assembly of the bc1 complex (9-11). The translocation and maturation of the Cox subunit, Cox2p, is almost completely blocked (12, 13) and several other membrane subunits are degraded (14). Oxa1p interacts with nascent mitochondrial polypeptides and it has been proposed that it could act as part of a general membrane insertion machinery (15). Oxa1p is functionally conserved in fission yeast, human and plant mitochondria (16-18) and in chloroplasts, its homologue Alb3 plays a role in the insertion of the light harvesting chlorophyll-binding proteins into the thylakoid (19,20).The functional conservation of Oxa1p through evolution suggests a crucial role in the mechanism of protein insertion into the membrane, but its precise function remains poorly understood. Interestingly, we found that its absence in yeast mitochondria can be partially compensated for by different mutations. First, ATP synthase assembly and activity is fully restored in a strain lacking the mitochondrial protease Yme1p (14). Second, we have isolated several suppressor mutations in th...