2018
DOI: 10.1002/prot.25510
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Clustering of multi‐domain protein sequences

Abstract: The overall function of a multi-domain protein is determined by the functional and structural interplay of its constituent domains. Traditional sequence alignment-based methods commonly utilize domain-level information and provide classification only at the level of domains. Such methods are not capable of taking into account the contributions of other domains in the proteins, and domain-linker regions and classify multi-domain proteins. An alignment-free protein sequence comparison tool, CLAP (CLAssification … Show more

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Cited by 2 publications
(1 citation statement)
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“…Protein domains are elementary units of protein structure and evolution, which mediate most (~75%) protein interactions (16,17). The length of the domain is usually between 25 amino acids and 500 amino acids (18)(19)(20). The enriched domain of the upregulated proteins was mainly 'galactose-binding domain-like', whereas the downregulated proteins were enriched in the 'serine proteases, trypsin domain' and 'peptidase S1, PA clan' protein domains (Fig.…”
Section: Comparison Of the Protein Profiles Between Ues And Mesmentioning
confidence: 99%
“…Protein domains are elementary units of protein structure and evolution, which mediate most (~75%) protein interactions (16,17). The length of the domain is usually between 25 amino acids and 500 amino acids (18)(19)(20). The enriched domain of the upregulated proteins was mainly 'galactose-binding domain-like', whereas the downregulated proteins were enriched in the 'serine proteases, trypsin domain' and 'peptidase S1, PA clan' protein domains (Fig.…”
Section: Comparison Of the Protein Profiles Between Ues And Mesmentioning
confidence: 99%