2018
DOI: 10.1039/c7ra12693j
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Coherency image analysis to quantify collagen architecture: implications in scar assessment

Abstract: A novel technique for the fast and robust quantification of collagen architecture following scarring.

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Cited by 83 publications
(69 citation statements)
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“…OrientationJ plugin was used to quantify the coherency parameter by choosing a specific sequence of ROIs in confocal acquisitions, based on the measure of the structure tensors in a local neighborhood. At the same time, the software calculated the value of orientation and coherency that represented the degree to which the actin fibers were oriented: more disordered fibers have values near 0, whereas perfectly aligned ones show coherency value of about 1 [34]. Integrated density was also calculated by the sum of the pixels values in the ROIs on confocal acquisitions in order to quantify the amount of actin fibers in cells.…”
Section: Methodsmentioning
confidence: 99%
“…OrientationJ plugin was used to quantify the coherency parameter by choosing a specific sequence of ROIs in confocal acquisitions, based on the measure of the structure tensors in a local neighborhood. At the same time, the software calculated the value of orientation and coherency that represented the degree to which the actin fibers were oriented: more disordered fibers have values near 0, whereas perfectly aligned ones show coherency value of about 1 [34]. Integrated density was also calculated by the sum of the pixels values in the ROIs on confocal acquisitions in order to quantify the amount of actin fibers in cells.…”
Section: Methodsmentioning
confidence: 99%
“…In order to eliminate the noise resulting from the presence of biocarbon particles and the background of the image itself, image processing was applied, and a binary object mask was created. This procedure was developed to assess the orientation of tissue structures such as collagen fibers [48][49][50], while it is often used for evaluation of the fiber arrangement in polymer composites [51][52][53], which is also the subject of the presented research.…”
Section: Characterizationmentioning
confidence: 99%
“…Therefore, while this could indicate a decrease in the intrinsic stiffness of collagen fibers, it does not eliminate the possibility of tissue-level structure/architecture affecting the observed behavior (Hill et al, 2014). For instance, reduced collagen fiber coherency was detected at the endocardial levels ( Fig 4h ), indicating a more sparse and isotropic distribution of collagen fibers in the aging group (Clemons et al, 2018). This has the potential to affect the load transfer mechanism of endocardial collagen fibers, contributing to reduced effective modulus at the tissue level.…”
Section: Discussionmentioning
confidence: 97%