“…Strikingly, analysis performed using the human phenotype ontology database indicated that proteins identified as being decreased in their phosphorylation state in brains from mice with autophagy deficits are associated with EEG abnormality and seizure onset in humans (Fig 7A). These data, taken together with the fact that about 37% of “cytoskeletal protein binding” proteins identified in Fig 6G are directly involved in endocytosis and trafficking of GLUR1 subunit of AMPARs (CLTC, ANK3, DLG1, DPYSL2, EPB41L1, PPP1R9A, SHANK3 and STXBP5; Leonard et al , 1998; Carroll et al , 1999; Shen et al , 2000, 2020b; Uchino et al , 2006; Wu et al , 2008; Smith et al , 2014; Zhang et al , 2020; Fig 7B), prompted us to speculate that altered GLUR1 trafficking, rather than its direct phosphorylation by PKA is a crucial determinant of neuronal excitability in ATG5 KO neurons. In line with this hypothesis and the data described above (see Fig 6K–M), the colocalization of GLUR1 and postsynaptic density marker PSD95 was increased in cultured neurons lacking ATG5 (Appendix Fig S9G and H).…”