More than one-third of globally available freshwater resources is used for human activities, and freshwater pollutions by macro-and micro-pollutants are recurring and widespread (Sousa et al., 2018). Rivers are the most sensitive environmental compartments to pollution hazards, especially low Strahler order rivers, which may receive proportionally larger loads of pollutants relative to their water discharge (Honti et al., 2018; Munz et al., 2011). Hyporheic zone processes in rivers affect both biogeochemical activities and pollutant mixing in the sediment bed (Boano et al., 2014). Despite decades of intense research on the hyporheic zone, the dynamics of hyporheic zone processes remain partly unresolved. In particular, current approaches often fail to identify and hierarchize the predominant factors controlling interactions between pollutants and river sediment beds in the hyporheic zone. Hyporheic processes controlling pollutant transformation mainly occur at the sediment-water interface (SWI) where dissolved species (e.g., organic matter, nitrates, oxygen, etc.) from the overlying water or the groundwater mix within the riverbed sediment, resulting in various redox gradients, themselves controlling the pollutant fate in rivers (Byrne et al., 2014). Hydrological conditions in rivers, including the succession of low flow and flooding events, vertical surface-groundwater exchanges, and geomorphological variations of river reaches, affect the transport of dissolved pollutants at the SWI (Briggs et al., 2014; Dwivedi et al., 2018; Lansdown et al., 2015). In addition, the propensity of a pollutant to sorb and degrade within the sediment bed controls its accumulation in the hyporheic zone (Liao et al., 2013). Sorption typically increases the pollutant mean residence time in the sediment bed and alters its distribution across the hyporheic zone (Ren & Packman, 2004a, 2004b). Hence, the interplay between hydraulic processes and pollutant partitioning at the SWI currently limits our understanding of pollutant fate in river systems (Krause et al., 2017). In this context, the characterization of hyporheic exchanges in rivers can rely on laboratory tracer experiments (Liao et al., 2013). Tracers can be used as surrogates of pollutants that may facilitate investigations of