Nonindigenous
species are introduced worldwide with ballast water
(BW). To prevent further introductions, oceanic BW exchange and BW
treatment systems are utilized, but their performance needs to be
evaluated. To that aim, characterizing BW communities is essential
but usually relies on exhaustive sampling and morphological taxonomic
identification, which does not always allow fine-scale taxonomic resolution.
Through the analysis of BW samples from 11 vessels arriving to the
Chesapeake Bay (USA), we evaluated the potential of environmental
DNA (eDNA) metabarcoding for BW monitoring by assessing whether the
impact of BW management type could be identified, analyzing the influence
of BW sampling access locations on communities, and comparing the
accuracy of eDNA for taxonomic assignment and identification of nonindigenous
taxa. We found that (1) different sampling access locations of the
same tank resulted in different communities, (2) communities from
treated and exchanged BW differ, (3) signals of source port and of
ocean exchange are observed, (4) eDNA metabarcoding results in more
diversity than morphological taxonomy, and (5) the nonindigenous copepod Oithona davisae, not reported before in the Chesapeake Bay,
is detected. Overall, this study highlights the potential of eDNA
metabarcoding for BW monitoring, but more comprehensive sampling will
be needed to optimize the approach.