2016
DOI: 10.1002/jib.380
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Combining culture‐dependent and culture‐independent molecular methods for the isolation and purification of a potentially novel anaerobic species from pit mud in a Chinese liquor distillery

Abstract: Strain S12–27–1‐3‐5 (a potentially novel anaerobic species) with a 16S rRNA sequence homology of <97% was isolated and purified from pit mud by combining culture‐dependent and culture‐independent molecular methods, such as cloning of 16S rRNA, amplified rRNA restriction analysis, and denaturing gradient gel electrophoresis (DGGE). Phylogenetic analysis of the 16S rRNA gene indicated that strain S12–27–1‐3‐5 was related to Aminobacterium mobile strain ILE‐3 DSM 12262T and Aminobacterium colombiense strain DSM 1… Show more

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Cited by 5 publications
(4 citation statements)
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“…Therefore, pre-enrichment cultivation before pure cultivation may help revive the abundance of some unculturable microorganisms. Chao Lan Liu et al [84] designed an enrichment system to enrich microorganisms from Baijiu cellar mud, and the enrichment system DSMZ 827 was designed based on the growth conditions of a dominant bacterium, Petrimonas sulfuriphila BN3, found in the pit mud. The composition of the enrichment medium was retrieved from the Microbial Culture Collection Database of the DSMZ (German Collection of Microorganisms and Cell Cultures) (https://www.dsmz.de/collection/catalogue, accessed on 22 January 2023), which recommends specific culture media based on microbial species.…”
Section: Optimization Of Cultivation Methods and Culture Mediamentioning
confidence: 99%
“…Therefore, pre-enrichment cultivation before pure cultivation may help revive the abundance of some unculturable microorganisms. Chao Lan Liu et al [84] designed an enrichment system to enrich microorganisms from Baijiu cellar mud, and the enrichment system DSMZ 827 was designed based on the growth conditions of a dominant bacterium, Petrimonas sulfuriphila BN3, found in the pit mud. The composition of the enrichment medium was retrieved from the Microbial Culture Collection Database of the DSMZ (German Collection of Microorganisms and Cell Cultures) (https://www.dsmz.de/collection/catalogue, accessed on 22 January 2023), which recommends specific culture media based on microbial species.…”
Section: Optimization Of Cultivation Methods and Culture Mediamentioning
confidence: 99%
“…At present, the enhanced application of caproic acid bacteria mainly focuses on three aspects: aging of pit mud, maintenance of pit mud and enhanced fermentation [7,8,9]; At present, most wineries adopt caproic acid bacteria compound liquid prepared by single addition of caproic acid bacteria, combined fermentation of pure bacteria and mixed bacteria or enrichment culture of pit mud, which has no significant effect or unstable quality in actual production. How to effectively prepare multi-bacterial compound system is a difficult point in the development of caproic acid bacteria.…”
Section: Introductionmentioning
confidence: 99%
“…Some studies have determined the microbial community information of pit mud based on 16S rRNA gene information then designed corresponding media for key microorganisms screening [ 10 ]. Also, there were studies on screening new species from pit mud based on 16S rRNA gene information [ 11 ]. Even some studies according to the prediction function of 16S rRNA gene diversity analysis predicted the species origin of key genes, then GRPWREC tool of KOMODO database was used to predict the screening medium based on the 16S rRNA gene information of microorganisms, and finally the key gene expression strains were screened [ 12 ].…”
Section: Introductionmentioning
confidence: 99%