Human activities on land has led to increased delivery of nitrogen (N) to aquatic ecosystems, resulting in the degradation of receiving waters (Carpenter et al., 1998;Galloway et al., 2003). During the transfer from land to sea, these impacts are modulated by river networks that retain a considerable amount of N, either through temporary biotic uptake from the water column or permanent removal by denitrification in anoxic sediments (Hall et al., 2009;Seitzinger et al., 2006). Within hydrographic networks, modeling efforts suggest that large rivers have a substantial influence on basin-wide N retention (Seitzinger et al., 2002;Wollheim et al., 2006;Ye et al., 2017). This influence is explained by their broader reaches that increase water residence time and contact rate with reactive surfaces, combined with higher N loads due to their downstream position. However, N retention in rivers is highly heterogeneous (Piña-Ochoa & Álvarez-Cobelas, 2006), and specific locations, like submerged