Perfluoroalkyl substances pose a worldwide environmental health risk. It is important to develop new detection and quantification methods for perfluoroalkyl substances. Currently, liquid chromatography‐tandem mass spectrometry is the proposed method to analyze perfluoroalkyl substances. Ion chromatography, with its ability to use water samples as they are collected, could be a promising technique to detect anionic perfluoroalkyl substances in water. A new cationic stationary phase, composed of a resorcinarene bound to arginine, was synthesized and used to separate perfluoroalkyl substances by ion chromatography. The new packing material under the right gradient conditions separates perfluoroalkyl substances such as perfluorobutanoic acid, perfluorobutanesulfonic acid, perfluoropentanoic acid, perfluorohexanoic acid, perfluorohexanesulfonic acid, and perfluorooctanoic acid. Unlike the case with common anions, it was found that decreasing the NaOH concentration in the eluent resulted in better perfluoroalkyl substances separation. The detection limits of the perfluoroalkyl substances were from 0.44 to 4.0 mg/L and the limits of quantification were from 1.5 to 13 mg/L. The retention times of the perfluoroalkyl substances were dependent on the number of CF2 groups and whether their acid group was sulfonate or carboxylate. Also, the detection of perfluoroalkyl substances in tap and lake water was accomplished.