The National Toxicology Program (NTP) has historically used Fischer 344/N (F344/N) rats for the majority of its bioassays. In 2008 the NTP switched rat strains and began using Harlan Sprague Dawley (SD) rats. The NTP had previously used female SD rats in nine bioassays. This article compares historical control (HC) tumor incidence rates from these nine SD rat studies with HC tumor rates from matched NTP F344/N rat bioassays to identify similarities and differences. Matching on sex, laboratory, diet, and route led to nine comparable F344/N rat studies. Our analyses revealed statistically significant strain differences in incidence rates for clitoral gland adenoma, mammary gland fibroadenoma, mammary gland carcinoma, thyroid gland C cell adenoma, and mononuclear cell leukemia. These represent five of the seven most common tumor types among female SD and F344/N rats in the NTP HC database. When vehicle was included as an additional matching criterion, the number of comparable F344/N rat studies dropped to four, but similar results were obtained. Among female F344/N rats, the incidence of pituitary gland pars distalis adenoma was significantly higher when the vehicle was corn oil as compared to water, suggesting a possible vehicle effect.