Melittin is a prototype of the ubiquitous antimicrobial peptides that induce pores in membranes. It is commonly used as a molecular device for membrane permeabilization. Even at concentrations in the nanomolar range, melittin can induce transient pores that allow transmembrane conduction of atomic ions but not leakage of glucose or larger molecules. At micromolar concentrations, melittin induces stable pores allowing transmembrane leakage of molecules up to tens of kilodaltons, corresponding to its antimicrobial activities. Despite extensive studies, aspects of the molecular mechanism for pore formation remain unclear. To clarify the mechanism, one must know the states of the melittin-bound membrane before and after the process. By correlating experiments using giant unilamellar vesicles with those of peptide-lipid multilayers, we found that melittin bound on the vesicle translocated and redistributed to both sides of the membrane before the formation of stable pores. Furthermore, stable pores are formed only above a critical peptide-to-lipid ratio. The initial states for transient and stable pores are different, which implies different mechanisms at low and high peptide concentrations. To determine the lipidic structure of the pore, the pores in peptide-lipid multilayers were induced to form a lattice and examined by anomalous X-ray diffraction. The electron density distribution of lipid labels shows that the pore is formed by merging of two interfaces through a hole. The molecular property of melittin is such that it adsorbs strongly to the bilayer interface. Pore formation can be viewed as the bilayer adopting a lipid configuration to accommodate its excessive interfacial area.toroidal pore | oriented circular dichroism | rhombohedral phase M elittin, the major toxin of the bee venom discovered around 1970 (1), produces a variety of effects on nature membranes, including cell lysis (2), antimicrobial activity (3), and voltage-dependent ion conductance (4). A great number of hostdefense antimicrobial peptides (5, 6) discovered in the past three decades have been found to exhibit similar behavior of melittin (3, 7). Among membrane-active peptides, melittin is perhaps the most extensively studied (8-12). It is widely used for cell and liposome lysis and as a model for pore-forming peptides (7, 13). Its whole and partial amino acid sequences have been incorporated in the designs of synthetic proteins to mimic the property of melittin (14, 15). However, its molecular process and mechanism of activities are still in dispute. It is clear that melittin binds to membranes as monomers but acts on the membrane collectively. Even at concentrations as low as a few nanomoles per liter, melittin can induce transient pores that allow transmembrane conduction of atomic ions but not leakage of glucose or larger molecules (4,7,16). In the micromolar range, melittin induces stable pores allowing transmembrane leakage of molecules up to tens of kilodaltons (13,17,18). At even higher concentrations, it can act as a detergent disin...