during the summers of 2008 and 2009 revealed that both air and surface seawater partial pressures of CO 2 (pCO 2 ) showed regular diurnal cycles. Minimum values occurred in the evening and maximum values in the morning. Air pCO 2 in each of the three study areas showed small diurnal variations, while large diurnal variations were observed in seawater pCO 2 . The diurnal variation amplitude of seawater pCO 2 was ~70 μmol mol -1 at the Yongshu Reef lagoon, 420-619 μmol mol -1 on the Yongxing Island reef flat, and 264-579 μmol mol -1 on the reef flat of the Luhuitou Fringing Reef, and 324-492 μmol mol -1 in an adjacent area just outside of this fringing reef. With respect to spatial relations, there were large differences in air-sea CO 2 flux across the South China Sea (e.g. ~0.4 mmol CO 2 m -2 d -1 at Yongshu Reef, ~4.7 mmol CO 2 m -2 d -1 at Yongxing Island, and ~9.8 mmol CO 2 m -2 d -1 at Luhuitou Fringing Reef). However, these positive values suggest that coral reef ecosystems of the SCS may be a net source of CO 2 to the atmosphere. Additional analyses indicated that diurnal variations of surface seawater pCO 2 in the shallow water reef flat are controlled mainly by biological metabolic processes, while those of deeper water lagoons and outer reef areas are regulated by both biological metabolism and hydrodynamic factors. Unlike the open ocean, inorganic metabolism plays a significant role in influencing seawater pCO 2 variations in coral reef ecosystems. coral reefs, pCO 2 , carbon cycle, summer, South China Sea Citation: