The lipopolysaccharide (LPS) of the deep rough mutant Haemophilus influenzae I69 consists of lipid A and a single 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) residue substituted with one phosphate at position 4 or 5 (Helander, I. M., Lindner, B., Brade, H., Altmann, K., Lindberg, A. A., Rietschel, E. T., and Zä hringer, U. (1988) Eur. J. Biochem. 177, 483-492). The waaA gene encoding the essential LPS-specific Kdo transferase was cloned from this strain, and its nucleotide sequence was identical to H. influenzae DSM11121. The gene was expressed in the Gram-positive host Corynebacterium glutamicum and characterized in vitro to encode a monofunctional Kdo transferase. waaA of H. influenzae could not complement a knockout mutation in the corresponding gene of an Re-type Escherichia coli strain. However, complementation was possible by coexpressing the recombinant waaA together with the LPS-specific Kdo kinase gene (kdkA) of H. influenzae DSM11121 or I69, respectively. The sequences of both kdkA genes were determined and differed in 25 nucleotides, giving rise to six amino acid exchanges between the deduced proteins. Both E. coli strains which expressed waaA and kdkA from H. influenzae synthesized an LPS containing a single Kdo residue that was exclusively phosphorylated at position 4. The structure was determined by nuclear magnetic resonance spectroscopy of deacylated LPS. Therefore, the reaction products of both cloned Kdo kinases represent only one of the two chemical structures synthesized by H. influenzae I69.Haemophilus influenzae is a nonenteric Gram-negative bacterium that is found in the human respiratory tract and may cause severe diseases, in particular septicemia and meningitis in children. One major virulence factor of this pathogen is the type b capsular polysaccharide, which is also the basis of the presently used vaccine (1). In addition, lipopolysaccharides (LPS) 1 play a crucial role in the interaction of this microorganism with the host's immune system. LPS contribute to each stage of pathogenesis of H. influenzae infection including colonization of the upper respiratory tract, systemic dissemination, and the invasion of the central nervous system (2). During these processes, several surface exposed epitopes of the molecule are the subject of high frequency phase variation. LPS are the major amphiphilic constituents of the outer leaflet of the outer membrane of Gram-negative bacteria. They share a common architecture composed of a membrane-anchored phosphorylated and acylated (136) linked glucosamine disaccharide, termed lipid A, to which a carbohydrate moiety of varying size is attached. The latter always contains 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) linked to lipid A. Mutants that are defective in biosynthetic enzymes of the Kdolipid A region are conditionally thermosensitive, indicating that this minimal structure is absolutely required for the integrity of the outer membrane and microbial cell growth (3, 4). Based on these findings, the corresponding enzymes evoked increasing interest as ...