The current model of Epstein-Barr virus (EBV) infection and persistence in vivo proposes that EBV uses the germinal center (the GC model) to establish a quiescent latent infection in otherwise-normal memory B cells. However, the evidence linking EBV-infected cells and the GC is only indirect and limited. Therefore, a key portion of the model, that EBV-infected cells physically reside and participate in GCs, has yet to be verified. Furthermore, recent experiments suggested that upon infection of GC cells the viral growth latency transcription program is dominant and GC functionality and phenotype are ablated, i.e., EBV infection is not consistent with GC function. In this study we show that in vivo, EBV-infected B cells in the tonsils retain expression of functional and phenotypic markers of GC cells, including bcl-6 and AID. Furthermore, these cells are physically located in the GC and express a restricted form of latency, the default latency program. Thus, the EBV default latency transcription program, unlike the growth latency program, is consistent with the retention of GC functionality in vivo. This work verifies key components of the GC model of EBV persistence and suggests that EBV and the GC can interact to produce the latently infected memory cells found in the periphery. Furthermore, it identifies latently infected GC B cells as a potential pathogenic nexus for the development of the EBV-positive, GC-associated lymphomas Hodgkin's disease and Burkitt's lymphoma.Epstein-Barr virus (EBV) is able to promiscuously and efficiently infect any resting B cell in culture, leading to cellular activation, proliferation, and the outgrowth of transformed lymphoblastoid cell lines (the growth latency transcription program, also known as latency 3) (38, 48). Not surprisingly, the virus is also associated with important human malignancies that include B-cell lymphomas (Burkitt's, Hodgkin's, and immunoblastic lymphomas in the immunosuppressed) and carcinomas (nasopharyngeal and gastric) (38, 50). Despite its pathogenic potential, EBV benignly infects Ͼ90% of the human population and persists for life. A central question in understanding both persistent infection and the origins of EBV-associated cancer is how the host and virus interact to allow benign persistent infection. Specifically, how does this interaction regulate and limit the capacity of the virus to drive cellular growth?An important insight into this question was the discovery that EBV persists in circulating, resting, memory B cells (5, 50) These cells do not express viral proteins (17) and appear to be maintained in the periphery by normal memory B-cell homeostasis mechanisms, not by the growth-promoting activity of the virus (44). Consequently, they are not a pathogenic risk to the host nor are they subject to immunosurveillance and can therefore persist benignly within the human host for decades.The mechanism by which EBV gains access to the memory B cell remains controversial. The most widely held model is that the virus uses the growth latency program ...