Comparative metabolic profiling of pigmented rice (Oryza sativa L.) cultivars reveals primary metabolites are correlated with secondary metabolites

Kim, Jae Kwang; Park, Soo-Yun; Lim, Sung-Hun; Yeo, Yunsoo; Cho, Hyun Suk; Ha, Sun-Hwa

doi:10.1016/j.jcs.2012.09.012

Cited by 105 publications

(67 citation statements)

References 26 publications

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“…In addition, to gain more insight into the differences among samples, the variable importance in the projection (VIP) values were examined. The variables exhibiting a VIP score above a value of 1.0 given by PLS-DA were selected because they were considered to be significantly contributive to the discrimination of geographical origins [47]. As is evident in Fig 4, after data fusion, the variables that play the greatest role in discriminating inner part samples mainly distribute in the regions of 1725–1563, 1201–800 and 565–441 cm -1 , which comprise approximately 68% of the total 475 variables.…”

Section: Resultsmentioning

confidence: 99%

A Comprehensive and Comparative Study of Wolfiporia extensa Cultivation Regions by Fourier Transform Infrared Spectroscopy and Ultra-Fast Liquid Chromatography

Zhang

et al. 2016

PLoS ONE

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Nowadays, Wolfiporia extensa as a popular raw material in food and medicine industry has received increasing interests. Due to supply shortage, this species of edible and medicinal mushroom has been cultivated in some provinces of China. In the present study, cultivated W. extensa collected from six regions in Yunnan Province of China were analyzed by an integrated method based on Fourier transform infrared (FT-IR) spectroscopy and ultra-fast liquid chromatography (UFLC) coupled with multivariate analysis including partial least squares discriminant analysis (PLS-DA) and hierarchical cluster analysis (HCA) in order to investigate the differences and similarities in different origins and parts. In the tested mushroom samples, characteristic FT-IR spectra were obtained for acquiring comprehensive fuzz chemical information and pachymic acid was determinated as a biomarker in the meantime. From the results, the comparison of samples was achieved successfully according to their geographical regions and different parts. All the samples displayed regional dependence and the inner parts showed better quality consistency. In addition, the chemical constituents of cultivated W. extensa could be also affected by the cultivation methods. Meanwhile, there was an interesting finding that the soil properties of cultivation regions may have a relationship with the chemical constituents of the epidermis of soil-cultured W. extensa, rather than the inner parts. Collectively, it demonstrated that the present study could provide comprehensive chemical evidence for the critical complement of quality evaluation on the cultivated W. extensa. Moreover, it may be available for the further researches of complicated mushrooms in practice.

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Section: Resultsmentioning

confidence: 99%

A Comprehensive and Comparative Study of Wolfiporia extensa Cultivation Regions by Fourier Transform Infrared Spectroscopy and Ultra-Fast Liquid Chromatography

Zhang

et al. 2016

PLoS ONE

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“…In this study, hydrophilic primary metabolites from sweet potatoes were profiled using gas chromatography-time-of-flight mass spectrometry (GC-TOFMS) to determine phenotypic variations and relationships among metabolite contents. A GC-TOFMS-based metabolic profiling analysis facilitates rapid and highly sensitive detection of plant metabolites from the central pathways of primary metabolism (7,8). Carotenoids, flavonoids, anthocyanins, and phenolic acids were quantified as bioactive secondary metabolites to evaluate the quality of three sweet potato varieties.…”

Section: Introductionmentioning

confidence: 99%

Comparative analysis of phytochemicals and polar metabolites from colored sweet potato (Ipomoea batatas L.) tubers

Park

Lee

Yang

et al. 2016

Food Sci Biotechnol

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We determined the phytochemical diversity, including carotenoids, flavonoids, anthocyanins, and phenolic acids, in sweet potatoes ( L.) with distinctive flesh colors (white, orange, and purple) and identified hydrophilic primary metabolites. Carotenoid content was considerably higher in orange-fleshed sweet potatoes, wherein β-carotene was the most plentiful, and anthocyanins were detected only in purple-fleshed sweet potatoes. The levels of phenolic acids and flavonoids were relatively higher in purple-fleshed sweet potatoes than those in the other two varieties. Forty-one primary and 18 secondary metabolite profiles were subjected to multivariate statistical analyses, which fully distinguished among the varieties and separated orange- and purple-fleshed sweet potatoes from white-fleshed sweet potatoes based on the high levels of sugars, sugar alcohols, and secondary metabolites. This is the first study to determine comprehensive metabolic differences among different color-fleshed sweet potatoes and provides useful information for genetic manipulation of sweet potatoes to influence primary and secondary metabolism.

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“…Heuberger et al (2010) detected 3,097 signals in 10 rice varieties using ultra performance liquid chromatography (UPLC-MS)10. Similarly, using GC-TOF-MS, Lou et al (2011) identified 41 metabolites showing a wide range of variations in 48 distinct rice germplasms11, whilst Kim et al (2012) identified 52 metabolites in seven cultivars by GC-TOF-MS12. Matsuda et al (2012) conducted metabolic quantitative trait loci (mQTL) analysis in rice grains using inbred lines, and determined few loci affecting levels of metabolites13.…”

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confidence: 99%

Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics

Shi

Quan

et al. 2014

Sci Rep

158

129

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Seed metabolites are critically important both for plant development and human nutrition; however, the natural variation in their levels remains poorly characterized. Here we profiled 121 metabolites in mature seeds of a wide panel Oryza sativa japonica and indica cultivars, revealing correlations between the metabolic phenotype and geographic origin of the rice seeds. Moreover, japonica and indica subspecies differed significantly not only in the relative abundances of metabolites but also in their corresponding metabolic association networks. These findings provide important insights into metabolic adaptation in rice subgroups, bridging the gap between genome and phenome, and facilitating the identification of genetic control of metabolic properties that can serve as a basis for the future improvement of rice quality via metabolic engineering.

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Comparative metabolic profiling of pigmented rice (Oryza sativa L.) cultivars reveals primary metabolites are correlated with secondary metabolites

Cited by 105 publications

References 26 publications

A Comprehensive and Comparative Study of Wolfiporia extensa Cultivation Regions by Fourier Transform Infrared Spectroscopy and Ultra-Fast Liquid Chromatography

A Comprehensive and Comparative Study of Wolfiporia extensa Cultivation Regions by Fourier Transform Infrared Spectroscopy and Ultra-Fast Liquid Chromatography

Comparative analysis of phytochemicals and polar metabolites from colored sweet potato (Ipomoea batatas L.) tubers

Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics

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