Bacillus anthracis, the causative agent of anthrax, secretes numerous proteins into the extracellular environment during infection. A comparative proteomic approach was employed to elucidate the differences among the extracellular proteomes (secretomes) of three isogenic strains of B. anthracis that differed solely in their plasmid contents. The strains utilized were the wild-type virulent B. anthracis RA3 (pXO1 ؉ pXO2 ؉ ) and its two nonpathogenic derivative strains: the toxigenic, nonencapsulated RA3R (pXO1 ؉ pXO2 ؊ ) and the totally cured, nontoxigenic, nonencapsulated RA3:00 (pXO1 ؊ pXO2 ؊ ). Comparative proteomics using two-dimensional gel electrophoresis followed by computer-assisted gel image analysis was performed to reveal unique, up-regulated, or down-regulated secretome proteins among the strains. In total, 57 protein spots, representing 26 different proteins encoded on the chromosome or pXO1, were identified by peptide mass fingerprinting. S-layer-derived proteins, such as Sap and EA1, were most frequently observed. Many sporulation-associated enzymes were found to be overexpressed in strains containing pXO1؉ . This study also provides evidence that pXO2 is necessary for the maximal expression of the pXO1-encoded toxins lethal factor (LF), edema factor (EF), and protective antigen (PA). Several newly identified putative virulence factors were observed; these include enolase, a high-affinity zinc uptake transporter, the peroxide stress-related alkyl hydroperoxide reductase, isocitrate lyase, and the cell surface protein A.Bacillus anthracis, the etiologic agent of anthrax, is a grampositive, rod-shaped, nonmotile facultative anaerobic and sporeforming bacterium (35). Anthrax is a disease of wildlife, livestock, and humans that begins when spores of B. anthracis enter a host, are engulfed by macrophages, germinate, and then cause septicemia. This pathogen's virulence, along with the spore's resistance to adverse environmental conditions and facility to be weaponized, has made it a significant agent of bioterrorism (1).In addition to a 5.2-Mb circular chromosome, fully virulent strains of B. anthracis harbor two plasmids: pXO1 and pXO2 (35). The pXO1 plasmid (181.6 kb) encodes the toxins lethal factor (LF) and edema factor (EF) and the protective antigen (PA) responsible for the translocation of EF and LF into the host's cytosol (35). The cascade of events leading to toxin entry into host cells has been described (7). The genes encoding LF, EF, and PA are designated lef, cya, and pagA, respectively (8,50,63). Proteins required for a proteinous capsule biosynthesis (CapBCA) and depolymerization (Dep) are encoded on pXO2 (94.8 kb) (29,60). Strains lacking either or both plasmids are attenuated in most animal hosts (22). The transcriptions of lef, cya, pagA, and capB have all been shown to be coordinately induced by the presence of bicarbonate-CO 2 , while temperature has been shown to be important for toxin, but not for CapB, production (55). High CO 2 tension is believed to simulate conditions encountere...