Monodispersed droplets could be easily generated in coaxial microdevice, and a reaction based upon these discrete droplets is an attractive approach thanks to isolated reaction units, efficient mixing, and precise residence time control. In this work, free radical polymerization of butyl acrylate was conducted in monodispersed droplets of several hundred microns. Two different heating methodologies, microwave heating and conventional heating with oil bath were adopted to initiate polymerization, respectively. The polymerization under conventional heating could be regarded as an isothermal process, while the polymerization under microwave heating gradually underwent a temperature increase. So the poly (butyl acrylate) obtained by microwave heating has larger average molecular weight and higher polydispersity index. Meanwhile, the conversion of butyl acrylate was significantly improved by microwave heating compared with conventional heating, even though the reaction temperature under microwave heating might be lower than the temperature of the oil bath. This remarkable enhancement was a direct proof of the nonthermal effect of the microwave field for free radical polymerization.