2019
DOI: 10.3390/ijms20081906
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Comparative Transcriptomic Studies on a Cadmium Hyperaccumulator Viola baoshanensis and Its Non-Tolerant Counterpart V. inconspicua

Abstract: Many Viola plants growing in mining areas exhibit high levels of cadmium (Cd) tolerance and accumulation, and thus are ideal organisms for comparative studies on molecular mechanisms of Cd hyperaccumulation. However, transcriptomic studies of hyperaccumulative plants in Violaceae are rare. Viola baoshanensis is an amazing Cd hyperaccumulator in metalliferous areas of China, whereas its relative V. inconspicua is a non-tolerant accumulator that resides at non-metalliferous sites. Here, comparative studies by tr… Show more

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Cited by 28 publications
(9 citation statements)
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“…Raw read counts per gene were then obtained from the mapping results using RSEM. To compare transcriptional levels between T. rosa and T. bleekeri, differential expression analysis was narrowed down to only those assembled transcripts that were orthologously presented in the two loaches, as previously described (Jiang et al, 2019;Shu et al, 2019). We used reciprocal best hits (RBH) BLAST (Moreno-Hagelsieb and Latimer, 2008) to identify orthologous genes between the two constitutive transcriptomes.…”
Section: Analysis Of Gene Expression and Degsmentioning
confidence: 99%
“…Raw read counts per gene were then obtained from the mapping results using RSEM. To compare transcriptional levels between T. rosa and T. bleekeri, differential expression analysis was narrowed down to only those assembled transcripts that were orthologously presented in the two loaches, as previously described (Jiang et al, 2019;Shu et al, 2019). We used reciprocal best hits (RBH) BLAST (Moreno-Hagelsieb and Latimer, 2008) to identify orthologous genes between the two constitutive transcriptomes.…”
Section: Analysis Of Gene Expression and Degsmentioning
confidence: 99%
“…The issue contains a total of 19 articles (Table 1). There are four reviews covering the following topics: phytoremediation [3], manganese phytotoxicity in plants [4], cadmium effect on plant development [5], the genetic characteristics of Cd accumulation and the research status of genes and quantitative trait loci (QTLs) in rice [6], and fifteen original research articles, mainly regarding the impact of cadmium on plants [7][8][9][10][11][12][13][14][15][16][17][18][19][20][21]. This special issue, entitled "Heavy Metals Accumulation, Toxicity, and Detoxification in Plants", explores three main issues concerning heavy metals: (a) the accumulation and partitioning of heavy metals in crops and wild plants; (b) the toxicity and molecular behaviors of cells, tissues, and their effects on physiology and plant growth; and (c) detoxification strategies, plant tolerance, and phytoremediation.…”
mentioning
confidence: 99%
“…The issue contains a total of 19 articles (Table 1). There are four reviews covering the following topics: phytoremediation [3], manganese phytotoxicity in plants [4], cadmium effect on plant development [5], the genetic characteristics of Cd accumulation and the research status of genes and quantitative trait loci (QTLs) in rice [6], and fifteen original research articles, mainly regarding the impact of cadmium on plants [7][8][9][10][11][12][13][14][15][16][17][18][19][20][21]. Cadmium is therefore the predominant topic of this special issue, thus confirming the focus of the research community on the negative impacts determined by cadmium or cadmium associated with other heavy metals.…”
mentioning
confidence: 99%
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