The innate ability to detect pathogens is achieved by pattern recognition receptors, which recognize non-self-components such as 1,3-glucan. 1,3-Glucans form a triple-helical structure stabilized by interchain hydrogen bonds. 1,3-Glucan recognition protein (GRP)/Gram-negative bacteria-binding protein 3 (GNBP3), one of the pattern recognition receptors, binds to long, structured 1,3-glucan to initiate innate immune response. However, binding details and how specificity is achieved in such receptors remain important unresolved issues. We solved the crystal structures of the N-terminal 1,3-glucan recognition domain of GRP/GNBP3 (GRP-N) in complex with the 1,3-linked glucose hexamer, laminarihexaose. In the crystals, three structured laminarihexaoses simultaneously interact through six glucose residues (two from each chain) with one GRP-N. The spatial arrangement of the laminarihexaoses bound to GRP-N is almost identical to that of a 1,3-glucan triple-helical structure. Therefore, our crystallographic structures together with site-directed mutagenesis data provide a structural basis for the unique recognition by such receptors of the triple-helical structure of 1,3-glucan.Carbohydrate polymers form a wonderful variety of shapes and architecture with their different glycosidic linkages and many hydrogen bonding possibilities, as exemplified by the glucose polymers, cellulose, amylose, and -glucan (1). -Glucan, mostly found in fungi and plant cell walls, is a polymer consisting of a backbone of 1,3-linked glucose units and side chains of 1,6-linked units of varying lengths. 1,3-Glucan assumes a triple-helical structure according to x-ray fiber diffraction (2), solid state 13 C nuclear magnetic resonance spectroscopy (3), multiangle laser light scattering (4), fluorescence resonance energy transfer spectroscopy (5), and molecular dynamics simulation (6). In a widely accepted hydrogen bonding model, one 1,3-glucan chain forms intramolecular hydrogen bonds with the other two strands, perpendicular to the axis of the triple helix (7).The -glucan of pathogens is recognized as non-self by pattern recognition receptors in the host defense system (8 -11). Accumulating evidence suggests that the long triple-helical conformation of -glucan is important for binding to certain -glucan-binding receptors (7, 12). 1,3-Glucan recognition protein/Gram-negative bacteria-binding protein 3 (GRP/ GNBP3) 3 (13-15), a pattern recognition receptor of the innate immune system, binds triple-helical -glucan strongly but has little affinity for denatured -glucan or shorter 1,3-linked glucose oligomers (16,17). Furthermore, injection into the fly, Drosophila, of the alkali-insoluble fraction of the Aspergillus fumigatus cell wall, which includes long 1,3-glucans, strongly activates the antifungal Toll pathway (14), whereas short laminarioligosaccharides do not (16). To date, three-dimensional structures of the ligand-free GRP/GNBP3 N-terminal domain were reported revealed by x-ray crystallography (16) and solution NMR...