Background:The efficiency of prolonged down-regulation caused by a full-dose of gonadotropin-releasing hormone agonist (GnRH-a) injected during different menstrual phases has not yet been researched. Our goal was to evaluate the effects of GnRH-a, which was used in different phases of the menstrual cycle in patients undergoing in vitro fertilization and embryo transfer (IVF-ET). Methods: This was a retrospective cohort study.Three hundred and twenty patients received a prolonged pituitary down-regulated fulldose (3.75mg) of triptorelin in the early follicular phase, and 160 patients received the same full-dose of triptorelin during the mid-luteal phase. Clinical and laboratory outcomes were compared between the two groups. Results: The basic characteristics of the two groups were comparable. The mean number of retrieved oocytes, fertilized oocytes, cleavage oocytes and good quality embryos were comparable between the two groups.Although there was a higher antral follicle count (AFC), cyst formation rate, fertilization rate and cleavage rate in the follicular phase group, no statistically significant effects were seen on implantation rate (41.15% vs. 45.91%), clinical pregnancy rate (60.38% vs. 61.36%), ongoing pregnancy rate (57.74% vs. 57.58%), live birth rate (56.23% vs. 57.58%) or early abortion rate (2.64% vs. 3.79%) per fresh transfer cycle. Moreover, severe ovarian hyper-stimulation syndrome (OHSS) rates at the early stage (1.89% vs. 2.27%) were low in both groups. Conclusions: Prolonged pituitary down-regulation achieved by utilizing a full-dose of GnRH-a administrated in either phase of the menstrual cycle can have a positive effect on ongoing pregnancy rate and live-birth rate per fresh embryo transfer cycle. Ovarian cyst formation rate was higher in the follicular phase group, but this did not have any adverse impact on clinical results. PeerJ reviewing PDF | 28 29 30 ABSTRACT 31 Background: The efficiency of prolonged down-regulation caused by a full-dose of 32 gonadotropin-releasing hormone agonist (GnRH-a) injected during different menstrual phases 33 has not yet been researched. Our goal was to evaluate the effects of GnRH-a, which was used in 34 different phases of the menstrual cycle in patients undergoing in vitro fertilization and embryo 35 transfer (IVF-ET). 36 Methods: This was a retrospective cohort study. Three hundred and twenty patients received a 37 prolonged pituitary down-regulated full-dose (3.75mg) of triptorelin in the early follicular phase, PeerJ reviewing PDF | Manuscript to be reviewed 38 and 160 patients received the same full-dose of triptorelin during the mid-luteal phase. Clinical 39 and laboratory outcomes were compared between the two groups. 40 Results: The basic characteristics of the two groups were comparable. The mean number of 41 retrieved oocytes, fertilized oocytes, cleavage oocytes and good quality embryos were 42 comparable between the two groups. Although there was a higher antral follicle count (AFC), 43 cyst formation rate, fertilization rate and cleavage rate ...