Moraxella catarrhalis is a common commensal of the human respiratory tract that has been associated with a number of disease states, including acute otitis media in children and exacerbations of chronic obstructive pulmonary disease in adults. During studies to investigate the outer membrane proteins of this bacterium, two novel major proteins, of approximately 19 kDa and 16 kDa (named OMP J1 and OMP J2, respectively), were identified. Further analysis indicated that these two proteins possessed almost identical gene sequences, apart from two insertion/deletion events in predicted external loops present within the putative barrel-like structure of the proteins. The development of a PCR screening strategy found a 100% (96/96) incidence for the genes encoding the OMP J1 and OMP J2 proteins within a set of geographically diverse M. catarrhalis isolates, as well as a significant association of OMP J1/OMP J2 with both the genetic lineage and the complement resistance phenotype (Fisher's exact test; P < 0.01). Experiments using two ⌬ompJ2 mutants (one complement resistant and the other complement sensitive) indicated that both were less easily cleared from the lungs of mice than were their isogenic wild-type counterparts, with a significant difference in bacterial clearance being observed for the complement-resistant isolate but not for its isogenic ⌬ompJ2 mutant (unpaired Student's t test; P < 0.001 and P ؍ 0.32). In this publication, we characterize a novel outer membrane protein of Moraxella catarrhalis which exists in two variant forms associated with particular genetic lineages, and both forms are suggested to contribute to bacterial clearance from the lungs.The gram-negative bacterium Moraxella catarrhalis is a common commensal of the human upper respiratory tract which has been associated with a number of disease states, including acute otitis media in children ( 9 , 14) and both acute and chronic bronchitis in adults (16,32). Nosocomial outbreaks of this pathogen have also been reported (10, 34), as well as cases of nearly fatal pneumonia (11). The morbidity burden of M. catarrhalis is particularly noticeable in young children suffering from recurrent otitis media episodes (13) and in adults presenting with chronic obstructive pulmonary disease (35).One particularly important virulence trait of M. catarrhalis is serum resistance (21), with several outer membrane proteins (OMPs) being implicated in the expression of this particular phenotype. Of particular importance is the UspA2 protein, a vitronectin binding protein whose N-terminal half may confer complement resistance on certain isolates (1,33,41). Other OMPs associated with virulence include the iron acquisition protein CopB (20), a hemagglutinin (28), and the lipooligosaccharide (44). Interestingly, there is increasing evidence to suggest that particular virulence traits are associated with distinct subpopulations of M. catarrhalis (8,12,42).Several OMPs of M. catarrhalis have been shown to elicit an antibody response in humans and have therefore been s...