TRISO fuel particle using ZrC has better strength and resistance to high temperatures than SiC. Previous studies show that the ZrC layer, as a substitution of SiC within the TRISO layer of coated fuel particles, has an insignificant difference in the performance of the neutronic aspect. Further neutronic studies are required to obtain the best combination of thorium-based fuel with ZrC coating for HTGR. This study analyzed the neutronic performance of three types of thorium-based fuels, oxide, carbide, and nitride, for HTGR. The reactor design refers to the High-Temperature Test Reactor with some axial and radial fuel configuration adjustments. This reactor is designed to operate at 200 MWt and has been modified to use a ZrC layer as a substitute for the SiC layer on the coated fuel particles. The neutronic study is carried out using SRAC2006 code with JENDL 4.0 nuclear data library. Neutronic parameters analyzed include multiplication factor, power peaking factor, and neutron spectrum. Neutronic analysis results show that thorium nitride fuel’s multiplication factor (k
eff) is better than other compared fuel types with k-eff 1.050, higher than thorium carbide, 1.004. At the same time, thorium oxide has been sub-critical. The power-peaking value of all materials is close to the ideal peaking value that is one. Other neutronic aspects, such as the neutron spectrum for three compared fuel types, have a similar trend.