Background
Salmonella enterica
possess several iron acquisition systems, encoded on the chromosome and plasmids. Recently, we demonstrated that incompatibility group (Inc) FIB plasmid-encoded iron acquisition systems (Sit and aerobactin) likely play an important role in persistence of
Salmonella
in human intestinal epithelial cells (Caco-2). In this study, we sought to determine global transcriptome analyses of
S. enterica
in iron-rich (IR) and iron-depleted (ID) growth conditions.
Results
The number of differentially-expressed genes were substantially higher for recipient (SE819) (
n
= 966) and transconjugant (TC) (
n
= 945) compared to the wild type (WT) (SE163A) (
n
= 110) strain in ID as compared to IR growth conditions. Several virulence-associated factors including T3SS, flagellin, cold-shock protein (
cspE
), and regulatory genes were upregulated in TC in ID compared to IR conditions. Whereas, IS1 and
acrR
/
tetR
transposases located on the IncFIB plasmid, ferritin and several regulatory genes were downregulated in TC in ID conditions. Enterobactin transporter (
entS
), iron ABC transporter (
fepCD
), colicin transporter, IncFIB-encoded enolase, cyclic di-GMP regulator (
cdgR
) and other regulatory genes of the WT strain were upregulated in ID compared to IR conditions. Conversely, ferritin, ferrous iron transport protein A (
feoA
), IncFIB-encoded IS1 and
acrR
/
tetR
transposases and ArtA toxin of WT were downregulated in ID conditions. SDS-PAGE coupled with LC-MS/MS analyses revealed that siderophore receptor proteins such as chromosomally-encoded IroN and, IncFIB-encoded IutA were upregulated in WT and TC in ID growth conditions. Both chromosome and IncFIB plasmid-encoded SitA was overexpressed in WT, but not in TC or recipient in ID conditions. Increased expression of flagellin was detected in recipient and TC, but not in WT in ID conditions.
Conclusion
Iron concentrations in growth media influenced differential gene expressions both at transcriptional and translational levels, including genes encoded on the IncFIB plasmid. Limited iron availability within the host may promote pathogenic
Salmonella
to differentially express subsets of genes encoded by chromosome and/or plasmids, facilitating establishment of successful infection.
Electronic supplementary material
The online version of this article (10.1186/s12864-019-5768-0) contains supplementary material, which is available to authorized users.