Iodide and acrylamide were applied simultaneously in a double-quenching experiment to compare acrylamide quenching constants for internal and external fluorophores of high-density lipoproteins (HDL1 and HDL2) from manganese-adequate (MnA) and deficient (MnD) rats, free of the electrostatic effects associated with iodide. In MnA HDL1 compared to MnD HDL1, the acrylamide quenching constant for external fluorophores was different (P < 0.1). In MnA HDL2, there were two populations of fluorophores accessible to acrylamide, whereas in MnD HDL2, all fluorophores were accessible to both quenchers. We concluded that there were structural (local environmental) differences, possibly charge-related, around the external fluorophores, and a slightly larger population of buried fluorophores in the MnD HDL1 compared with MnA HDL1. In MnA HDL2, one-third of the fluorophores were accessible to iodide, and all external and internal fluorophores were accessible to acrylamide, whereas in MnD HDL2, all fluorophores were accessible to both quenchers.