Cortical neurons exhibit astounding diversity in gene expression as well as in morphological and electrophysiological properties. Most existing neural taxonomies are based on either transcriptomic or morpho-electric criteria, as it has been technically challenging to study both aspects of neuronal diversity in the same set of cells. Here we used Patchseq to combine patch-clamp recording, biocytin staining, and single-cell RNA sequencing of over 1300 neurons in adult mouse motor cortex, providing a comprehensive morpho-electric annotation of almost all transcriptomically defined neural cell types. We found that, although broad families of transcriptomic types (Vip, Pvalb, Sst, etc.) had distinct and essentially non-overlapping morpho-electric phenotypes, individual transcriptomic types within the same family were not well-separated in the morpho-electric space. Instead, there was a continuum of variability in morphology and electrophysiology, with neighbouring transcriptomic cell types showing similar morpho-electric features, often without clear boundaries between them. Our results suggest that neural types in the neocortex do not always form discrete entities. Instead, neurons follow a hierarchy consisting of distinct non-overlapping branches at the level of families, but can form continuous and correlated transcriptomic and morpho-electrical landscapes within families. Figure 1: Transcriptomic coverage. (a) Number of Patch-seq cells assigned to each of the neural transcriptomic types (t-types) (Yao et al., in preparation). Colors are taken from the original publication, as well as the order of types. The filled part of each bar shows the number of morphologically reconstructed neurons. T-types with zero cells are shown with grey labels. Total number of neurons: 1221. (b) Normalized soma depths of all neurons of each t-type. For t-types with at least 3 cells, medians are indicated by horizontal lines. Soma depths were normalized by the cortical thickness in each slice (0: pia, 1: white matter). Grey horizontal lines indicate approximate layer boundaries identified via Nissl staining (L1: 0.07, L2/3: 0.29, L5: 0.73). Total number of neurons: 1181 (for some cells soma depth could not be measured due to failed staining). (c) T-SNE representation of CGE-derived interneurons from the single-cell 10x v2 reference dataset (n = 15 511; perplexity 30). T-type names are shortened by omitting the first word; some are abbreviated. Patch-seq cells from the Vip, Sncg, and Lamp5 families were positioned on this t-SNE atlas and are shown as black symbols. Markers indicate layer, see legend. (d) Like (c), but for MGE-derived interneurons (n = 12 083; perplexity 30). (e) Like (c), but for excitatory neurons (n = 93 829; perplexity 100). A single t-SNE embedding with all cells from panels (c-e) is shown in Figure S5.