Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker <i>Otolithes ruber</i> (Perciformes: Sciaenidae)

Guo, Chang-Chang; Liu, Min; Lin, Jian-Jie; Dai, Fangqun

doi:10.1080/23802359.2016.1247676

Cited by 2 publications

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“…The complete mitochondrial genome was annotated using Sequin version 15.10 (http://www.ncbi.nlm.nih.gov/Sequin) and tRNAscan-SE version 2.0 (http://trna.ucsc.edu/tRNAscan-SE/) (Lowe and Eddy 1997). Like typical vertebrate mitochondria (Guo et al 2017;Zhu et al 2018), the mitochondrial genome of K. punctatus was also a closed double-stranded circular molecule consisting of 16,705 nucleotides (GenBank accession number: MT801134.1), which was within the length of other bony fish mitochondrial genomes (Boore 1999). Compared with the study by Lavoue et al (S ebastien et al 2013), we had provided a new and more accurate sequence with a difference of 7 bases.…”

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confidence: 99%

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Characterization of the complete mitochondrial genome of Chinese Konosirus punctatus (Clupeiformes, Clupeidae) and phylogenetic studies of Clupeiformes

Zhang

Liu

et al. 2020

Mitochondrial DNA Part B

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The Dotted Gizzard Shad (Konosirus punctatus) was one of the most important commercial fish species in China, Japan and Korea. In this study, the complete mitochondrial genome of K. punctatus was presented. The full length of the mitochondrial genome was 16,705 bp, including 13 protein-coding genes (PCGs), two ribosomal RNAs, 22 transfer RNA genes, one non-coding control region (CR) and one origin of replication on the light-strand. The total nucleotide composition of mitochondrial DNA was 25.79%A, 25.09%T, 29.05%C, 20.08%G, and AT was 50.88%. The mitochondrial genome provides an important resource for solving taxonomic problems and studying molecular evolution.

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confidence: 99%

“…Like typical vertebrate mitochondria (Guo et al. 2017 ; Zhu et al. 2018 ), the mitochondrial genome of K. punctatus was also a closed double-stranded circular molecule consisting of 16,705 nucleotides (GenBank accession number: MT801134.1), which was within the length of other bony fish mitochondrial genomes (Boore 1999 ).…”

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confidence: 99%

Characterization of the complete mitochondrial genome of Chinese Konosirus punctatus (Clupeiformes, Clupeidae) and phylogenetic studies of Clupeiformes

Zhang

Liu

et al. 2020

Mitochondrial DNA Part B

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Mitochondrial genomes and phylogenetic analysis of Central American weakly-electric fishes:Apteronotus rostratus, Brachyhypopomus occidentalisandSternopygus dariensis

Aguilar

Miller

Loaiza

et al. 2018

Preprint

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21Electric fishes are a diverse group of freshwater organisms with the ability to generate 22 electric organ discharges (EODs) that are used for communication and electrolocation. Over 23 200 species have originated in South America, but of these, only a few have managed to 24 colonize the Central American Isthmus. Here, we assembled two complete and one nearly 25 complete mitochondrial genomes (mitogenomes) for three Central American Gymnotiformes: 26Sternopygus dariensis, Brachyhypopomus occidentalis and Apteronotus rostratus. We then 27 explored the three species' phylogenetic position in the context of South American electric 28 fishes. Mitogenomes were organized in the standard fish mitogenome order, and presented 29 sizes of 16,600, 16,540 and 15,940 base pairs (bp) (nearly complete) for S. dariensis, B. 30 occidentalis and A. rostratus, respectively. We uncovered a novel 60 bp intergenic spacer 31 (IGS) located between the COII and tRNA Lys genes, which appears to be unique to the 32Apteronotidae. Furthermore, phylogenetic relationships supported the traditional monophyly 33 of Gymnotiformes, with the three species positioned within their respective family. In 34 addition, the genus Apteronotus was placed as the basal taxon of the order. Finally, we found 35 high sequence divergence (13.3%) between our B. occidentalis specimen and a sequence 36 previously reported in GenBank, suggesting that the prior mitogenome of B. occidentalis 37 represents a different South American species that was misidentified. Indeed, phylogenetic 38 analyses using Cytochrome b gene across the genus placed the previously reported individual 39 within B. bennetti. Our study provides novel mitogenome resources that will advance our 40 understanding of the diversity and phylogenetic history of Neotropical fishes. 41 42

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Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker Otolithes ruber (Perciformes: Sciaenidae)

Cited by 2 publications

References 4 publications

Characterization of the complete mitochondrial genome of Chinese Konosirus punctatus (Clupeiformes, Clupeidae) and phylogenetic studies of Clupeiformes

Characterization of the complete mitochondrial genome of Chinese Konosirus punctatus (Clupeiformes, Clupeidae) and phylogenetic studies of Clupeiformes

Mitochondrial genomes and phylogenetic analysis of Central American weakly-electric fishes:Apteronotus rostratus, Brachyhypopomus occidentalisandSternopygus dariensis

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