Complete mitochondrial genome and the phylogenetic position of the Pawak croaker <i>Pennahia pawak</i> (Perciformes: Sciaenidae)

Lin, Bai-an; Guo, Chang-Chang; Liu, Min

doi:10.1080/23802359.2017.1334526

Cited by 2 publications

(3 citation statements)

References 5 publications

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“…Our finding is in agreement with previous studies that showed the relationships of the genus Pennahia with other species of the family Sciaenidae (Lin et al. 2017 ; Wen et al. 2020 ).…”

supporting

confidence: 94%

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Sequencing and analysis of the mitochondrial genome of Pennahia anea (Bloch, 1793) (Perciformes: Sciaenidae)

Van

Dao

et al. 2021

Mitochondrial DNA Part B

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Donkey croaker, Pennahia anea (Bloch, 1793) is a commercially important croaker in the Indo-Pacific region. In this study, we sequenced and analyzed the mitogenome of P. anea . The nearly complete mitochondrial genome of P. anea is 15,694 bp in size. It contained 13 protein-coding genes (PCGs), 2 rRNA genes, and 22 tRNA genes. The sequence had the A-T content of 55.4% and GC content of 44.6%. All 13 PCGs used ATG codon for initiation, while TAA codon was the most common for termination. Phylogenetic analysis demonstrated that P. anea is located within the genus Pennahia . This study provides additional data for the understanding of the phylogeny of the family Sciaenidae.

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“…Our finding is in agreement with previous studies that showed the relationships of the genus Pennahia with other species of the family Sciaenidae (Lin et al. 2017 ; Wen et al. 2020 ).…”

supporting

confidence: 94%

“… 2016 ; Lin et al. 2017 ). The sizes of PCGs ranged from 168 bp ( atp8 ) to 1,815 bp ( nd5 ) and the sizes of tRNA genes ranged from 68 bp (tRNA-Ser) to 75 bp (tRNA-Lys and tRNA-Leu).…”

mentioning

confidence: 99%

Sequencing and analysis of the mitochondrial genome of Pennahia anea (Bloch, 1793) (Perciformes: Sciaenidae)

Van

Dao

et al. 2021

Mitochondrial DNA Part B

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“…Mt genomes, which usually contain 12-13 proteincoding genes (PCGs), provide much higher phylogenetic resolution than single-gene markers, so they are becoming an increasingly popular tool for resolving phylogenetic debates (Der Sarkissian et al 2015, Lan et al 2017, Bourguignon et al 2018. Although a number of studies relied on this approach to study the phylogeny of the Sciaenidae (or selected sciaenid taxa) (Cheng et al 2010, Xu et al 2015, Zhao et al 2015, Lin et al 2017, Yang et al 2018, the resolution of the mitochondrial phylogenomics approach is still hampered by the limited number of mt genomes available for this family.…”

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confidence: 99%

Structure and evolution of the complete mitochondrial genome of the freshwater drum, Aplodinotus grunniens (Actinopterygii: Perciformes: Sciaenidae)

Wen¹,

Ma²,

Pao³

et al. 2020

Acta Ichthyol. Piscat.

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R. 2020. Structure and evolution of the complete mitochondrial genome of the freshwater drum, Aplodinotus grunniens (Actinopterygii: Perciformes: Sciaenidae). Acta Ichthyol. Piscat. 50 (1): 23-35.Background. Overfishing and habitat degradation caused a decline of populations of many fish species belonging to the speciose family Sciaenidae. A reliable taxonomic framework is a prerequisite for implementing effective stock management and conservation measures, but phylogeny and taxonomy of the Sciaenidae remain poorly resolved. As traditionally used morphological and single gene-based molecular markers carry a too limited phylogenetic signal for the task, mitochondrial phylogenomics may be a more suitable tool. The freshwater drum, Aplodinotus grunniens Rafinesque, 1819, is one of the few Sciaenidae species that live in freshwater habitats, which makes it an important model for studying the phylogeny and evolution of Sciaenidae. Material and methods. We sequenced and characterized its mitogenome, and reconstructed the phylogeny of Sciaenidae using mitogenomes of 28 species. Results. The architecture of the mitogenome (16487 bp in length) is standard for this family, and three typical elements were identified in the control region: extended termination associated sequences, central conserved region, and conserved sequence block. Poor availability of sciaenid mitogenomes (especially those belonging to different lineages) prevented us from resolving the phylogeny of this family with confidence. Notably, our results indicate that Larimichthys and Collichthys species may belong to a single genus, and we suspect that the mitogenome of Chrysochir aureus (Richardson, 1846) has been misidentified taxonomically, and urge its resequencing. Conclusion. The sequencing of additional mitogenomes belonging to non-represented and poorly represented lineages is needed to facilitate the understanding of phylogeny and taxonomy of Sciaenidae.

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Complete mitochondrial genome and the phylogenetic position of the Pawak croaker Pennahia pawak (Perciformes: Sciaenidae)

Cited by 2 publications

References 5 publications

Sequencing and analysis of the mitochondrial genome of Pennahia anea (Bloch, 1793) (Perciformes: Sciaenidae)

Sequencing and analysis of the mitochondrial genome of Pennahia anea (Bloch, 1793) (Perciformes: Sciaenidae)

Structure and evolution of the complete mitochondrial genome of the freshwater drum, Aplodinotus grunniens (Actinopterygii: Perciformes: Sciaenidae)

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