Complete mitochondrial genome sequence of lettuce pathogenic fungus, Fusarium oxysporum f. sp. lactucae 16-086

Abstract

Fusarium oxysporum f. sp. lactucae 016-086 is a plant pathogenic filamentous fungus isolated from wilted lettuce in Korea. We reported complete mitochondrial genome sequence of F. oxysporum f. sp. lactucae 016-086. Total length of this mitogenome is 41,826 bp and it encoded 42 genes (14 proteincoding genes, 2 rRNAs, and 26 tRNAs). Nucleotide sequence of coding region takes over 30.6%, and overall GC content is 32.5%. Phylogenetic tree of Fusarium mitochondrial genomes presented distinct clades along with nine formae speciales. This mitogenome will contribute distinguishing formae speciales of F. oxysoporum claearly with additional mitogenomes sequenced in the near future. ARTICLE HISTORY

The Complete Chloroplast Genome of Arabidopsis thaliana Isolated in Korea (Brassicaceae): An Investigation of Intraspecific Variations of the Chloroplast Genome of Korean A. thaliana

“…Instead, this phenomenon was found in genome studies focusing on intraspecific variations of insect, fungal, and marine invertebrate mitochondria. These include Laodelphax striatellus [ 93 , 94 ] and Nilaparvata lugens [ 95 – 97 ] belonging to the Delphacidae family; Fusarium oxysporum which is a fungal plant pathogen [ 98 , 99 ] and Apostichopus japonicus [ 100 ]. Because A. thaliana has a sufficient amount of sequencing data to construct chloroplast genomes, additional studies with more complete chloroplast genomes will provide a clear answer as to whether or not this phenomenon remains.…”

The complete mitochondrial genome of fungal endosymbiont, Ophiocordycipitaceae sp., isolated from Ricania speculum (Hemiptera: Ricaniidae)

“…Raw sequences obtained from Illumina HiSeq2000 (Macrogen Inc., Korea) were filtered by Trimmomatic 0.33 (Bolger et al 2014) and de novo assembled by Velvet 1.2.10 (Zerbino and Birney 2008) and gaps were closed with SOAPGapCloser 1.12 (Zhao et al 2011), BWA 0.7.17, and SAMtools 1.9 (Li et al 2009;Li 2013). Geneious R11 11.1.5 (Biomatters Ltd, Auckland, New Zealand) was used to annotate mitochondrial genome with referring mitogenomes of Tolypocladium inflatum (NC_036382; Zhang et al 2017) and Fusarium oxysporum (MN259514; Kwon et al 2019).…”

Complete mitochondrial genome sequence of Aspergillus flavus SRRC1009: insight of intraspecific variations on A. flavus mitochondrial genomes

“…Number of variations found in this study occupied small proportion on mitogenomes in comparison to the other fungal species, including Fusarium oxysporum (Kwon et al. 2019 ) as well as insect (e.g. Nilaparvata lugens (Choi et al.…”

“…In addition, 17 SNPs and 27 INDELs were found against JQ355000, one more sSNP was found in NAD5 and number of SNPs in genes is same to those of the previous comparison (Figure 1(B)). Number of variations found in this study occupied small proportion on mitogenomes in comparison to the other fungal species, including Fusarium oxysporum (Kwon et al 2019) as well as insect (e.g. Nilaparvata lugens (Choi et al 2019;, Laodelphax striatellus , Spodoptera frugiperda (Seo, Lee, et al 2019), and Aphis gossypii (Bee et al 2020; Park, Xi, et al 2019)) and plant species (Liriodendron tulipifera ).…”