Complete mitochondrial genome sequence of northeastern sika deer (
            <i>Cervus nippon hortulorum</i>
            )

Shao, Yuanchen; Zha, Daiming; Xing, Xiumei; Su, Weilin; Liu, Huamiao; Zhang, Ranran

doi:10.3109/19401736.2014.900671

Cited by 3 publications

(1 citation statement)

References 6 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…The size and orientation of tRNA and rRNA genes are similar to those of other cervids [8, 12-13, 21, 25-27, 33, 35]. The lack of the ''DHU'' arm in tRNA Ser has been reported in other species of Cervidae [8,21,[25][26][27]35]. The non-coding control region contains conserved sequence blocks, and termination-associated sequences; and can be used for fine-scale population studies, since it is amongst the most rapidly evolving segments in the animal mtDNA [17,19,24,28].…”

Section: Discussionsupporting

confidence: 55%

Complete mitochondrial genome sequence of a Hungarian red deer (Cervus elaphus hippelaphus) from high-throughput sequencing data and its phylogenetic position within the family Cervidae

Frank¹,

Barta²,

Bana³

et al. 2016

Acta Biologica Hungarica

View full text Add to dashboard Cite

Recently, there has been considerable interest in genetic differentiation in the Cervidae family. A common tool used to determine genetic variation in different species, breeds and populations is mitochondrial DNA analysis, which can be used to estimate phylogenetic relationships among animal taxa and for molecular phylogenetic evolution analysis. With the development of sequencing technology, more and more mitochondrial sequences have been made available in public databases, including whole mitochondrial DNA sequences. These data have been used for phylogenetic analysis of animal species, and for studies of evolutionary processes.We determined the complete mitochondrial genome of a Central European red deer, Cervus elaphus hippelaphus, from Hungary by a next generation sequencing technology. The mitochondrial genome is 16 354 bp in length and contains 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region, all of which are arranged similar as in other vertebrates. We made phylogenetic analyses with the new sequence and 76 available mitochondrial sequences of Cervidae, using Bos taurus mitochondrial sequence as outgroup. We used 'neighbor joining' and 'maximum likelihood' methods on whole mitochondrial genome sequences; the consensus phylogenetic trees supported monophyly of the family Cervidae; it was divided into two subfamilies, Cervinae and Capreolinae, and five tribes, Cervini, Muntiacini, Alceini, Odocoileini, and Capreolini. The evolutionary structure of the family Cervidae can be reconstructed by phylogenetic analysis based on whole mitochondrial genomes; which method could be used broadly in phylogenetic evolutionary analysis of animal taxa.

show abstract

Section: Discussionsupporting

confidence: 55%

Complete mitochondrial genome sequence of a Hungarian red deer (Cervus elaphus hippelaphus) from high-throughput sequencing data and its phylogenetic position within the family Cervidae

Frank¹,

Barta²,

Bana³

et al. 2016

Acta Biologica Hungarica

View full text Add to dashboard Cite

show abstract

Complete mitochondrial genome of a wild Alashan Red Deer ( Cervus elaphus alxaicus )

Liu

Ji-fei

Sun

et al. 2015

Mitochondrial DNA Part A

View full text Add to dashboard Cite

show abstract

Complete mitochondrial genome of red goral ( Naemorhedus baileyi ) and a complete estimate of the phylogenetic relationships in Caprinae

Shi

Sun

Teng

et al. 2015

Mitochondrial DNA Part A

View full text Add to dashboard Cite

Naemorhedus baileyi belongs to the genera Naemorhedus within the subfamily Caprinae. Because of small population, narrow distribution and difficult sampling, the taxonomic status of red goral in Caprinae is still not clear. We extracted the sample DNA and amplified whole mtDNA genome with different primers. We downloaded other gene sequences of Caprinae from GenBank. All sequences included 24 species of 11 genera. Phylogenetic analyses confirmed that the subfamily Caprinae is not monophyletic, bootstrap support for this cluster is high (100%).

show abstract

Complete mitochondrial genome sequence of northeastern sika deer ( Cervus nippon hortulorum )

Cited by 3 publications

References 6 publications

Complete mitochondrial genome sequence of a Hungarian red deer (Cervus elaphus hippelaphus) from high-throughput sequencing data and its phylogenetic position within the family Cervidae

Complete mitochondrial genome sequence of a Hungarian red deer (Cervus elaphus hippelaphus) from high-throughput sequencing data and its phylogenetic position within the family Cervidae

Complete mitochondrial genome of a wild Alashan Red Deer ( Cervus elaphus alxaicus )

Complete mitochondrial genome of red goral ( Naemorhedus baileyi ) and a complete estimate of the phylogenetic relationships in Caprinae

Contact Info

Product

Resources

About