Complete or High-Quality Draft Genome Sequences of Six Xanthomonas hortorum Strains Sequenced with Short- and Long-Read Technologies

Abstract

We report the genome sequences of six Xanthomonas hortorum species-level clade members, X. hortorum pathovars taraxaci, pelargonii, cynarae, and gardneri (complete genome sequences) and X. hortorum pathovars carotae and vitians (high-quality draft genome sequences). Both short- and long-read sequencing technologies were used.

Synergistic interaction between the type III secretion system of the endophytic bacterium Pantoea agglomerans DAPP‐PG 734 and the virulence of the causal agent of olive knot Pseudomonas savastanoi pv. savastanoi DAPP‐PG 722

“…The Hrp-1 T3SSs including their effectors are located on (putative) plasmids (this study, . Unfortunately, the fragmented state of the available draft genomes For a more detailed analysis the assembly should be improved by using long-read sequencing technologies (Dia et al, 2020;Smits, 2019).…”

“…Unfortunately, the fragmented state of the available draft genomes containing the Hrp ‐1 T3SSs does not allow conclusions on the full backbone of the plasmids, making a direct comparison impossible. For a more detailed analysis the assembly should be improved by using long‐read sequencing technologies (Dia et al, 2020 ; Smits, 2019 ).…”

Xanthomonas hydrangeae sp. nov., a novel plant pathogen isolated from Hydrangea arborescens

“…The DNA extraction, genome sequencing and subsequent assembly and annotation were carried out as previously described [23]. The genome sequences of strains LMG 31884 T , LMG 31887, LMG 31885 and LMG 31886 were deposited in EMBL, and their accession numbers are ERZ1690675, ERZ1690678, ERZ1690676 and ERZ1690677, respectively ().…”

Complete genome sequence of an Israeli isolate of Xanthomonas hortorum pv. pelargonii strain 305 and novel type III effectors identified in Xanthomonas

“…(3) Xh pv. vitians strain CFBP498 (accession GCF_903978195 (Dia et al, 2020)); (4) Xh strain Oregano108 (accession G C F _ 0 2 6 6 5 1 8 9 5 ) ; ( 5 ) X h s t r a i n j j 2 0 0 1 [ a c c e s s i o n GCF_024339125); (6) Xh pv. gardneri strain JS749-3 [accession Illustration of the gene order of the hrp2 cluster and adjacent T3E genes on the chromosome of Xhp305.…”

“…gardneri strain ICMP7383 [accession GCF_001908775 (Richard et al, 2017)]; (8) Xh pv. gardneri strain CFBP8129 [accession GCF_903978225 (Dia et al, 2020)]; and (9) Xh strain B07-007 (accession GCF_002285515). The following Xhp, other than Xhp305, were also included in the analysis: (1) Xhp strain OSU778 (accession GCA_025452115); (2) Xhp strain OSU498 (accession GCA_024498995); and (3) Xhp strain OSU493 (accession GCF_024499015).…”