Recognizing brain activity from EEG waves is an important field of study in biomedical engineering and neuroscience. Conventional approaches usually begin with signal processing techniques to extract features from the EEG data, and then machine learning algorithms are applied to classify the data. However, the spatial resolution of these EEG signals is low, which makes it difficult to pinpoint the exact location of the neural activity source in the brain. There are ongoing initiatives to use DL‐based brain activity recognition algorithms to overcome these constraints. Therefore, this work presents a novel hybrid framework for brain activity detection using the enhanced Stockwell transform and an EEG signal that is called LinkNet and modified bidirectional–long short‐term memory (LN‐MBi‐LSTM) model. This framework follows a methodical approach that includes stages for feature extraction, brain activity recognition and preprocessing. Firstly, the improved Weiner filtering (IWF) approach is used to preprocess the EEG input signal. The relevant features are then extracted using a feature extraction technique from the preprocessed EEG signal. To identify the brain activity, these recovered feature sets are subsequently processed separately using LinkNet and modified bidirectional–long short‐term memory (MBi‐LSTM). A thorough analysis that takes into account both simulation and experimental calculations is part of the validation process for the LN‐MBi‐LSTM model. Finally, this study demonstrates the therapeutic potential of the LN‐MBi‐LSTM framework by presenting a strong and verified model for brain activity recognition. With the highest precision of 0.997, the LinkNet‐MBi‐LSTM model distinguishes itself from other models and confirms its exceptional capacity to produce accurate positive predictions.