Korea’s first lunar mission, the Korea Pathfinder Lunar Orbiter (KPLO), aims to launch in mid-2022 via the Space-X Falcon-9 launch vehicle. For the successful flight operation of KPLO, the Korea Aerospace Research Institute (KARI) has designed and developed the Flight Dynamics Subsystem (FDS). FDS is one of the subsystems in the KPLO Deep-Space Ground System (KDGS), which is responsible for the overall flight dynamics-related operation. FDS is currently successfully implemented and meets all of the requirements derived from the critical design phases. The current work addresses the design and implementation results for the KPLO FDS. Starting from overviews on KPLO payloads, bus systems, and mission trajectory characteristics, a review on KDGS is also treated briefly. Details on the design philosophy, unique characteristics, and functionalities of all six different modules nested inside the FDS with its Graphical User Interface (GUI) design are discussed. Moreover, efforts currently devoted to the flight operation preparation of the KPLO are summarized, including many collaborative works between KARI and the National Aeronautics and Space Administration (NASA) teams.