In this work, we have developed user interactive capabilities that allow us to perform segmentation and manipulation of patient-specific geometries required for Computational Fluid Dynamics (CFD) studies, entirely in image domain and within a single platform of 'IAFEMesh'. Within this toolkit we have added commonly required manipulation capabilities for performing CFD on segmented objects by utilizing libraries like ITK, VTK and KWWidgets. With the advent of these capabilities we can now manipulate a single patient specific image into a set of possible cases we seek to study; which is difficult in commercially available software like VMTK, Slicer, MITK etc. due to their limited manipulation capabilities. Levelset representation of the manipulated geometries can be simulated in our flow solver without creating any surface or volumetric mesh. This image-levelset-flow framework offers few advantages. 1) We don't need to deal with the problems associated with mesh quality, edge connectivity related to mesh models, 2) and manipulations operations result in smooth, physically realizable entities which is challenging in mesh domain. We have validated our image-levelset-flow setup by simulating and validating the results of flow in idealized geometries like cylinder with empirical results and patient-specific flow in Intracranial aneurysm (ICA) with the known results from previous studies. We further demonstrated the utility of the toolkit by studying the effect of angle of flow extensions, and effect of aneurysm in Middle Cerebral Artery (MCA). The capabilities developed in this work enabled us to perform CFD simulations to understand the hemodynamics in Type-A aortic dissection. An aortic dissection is a life threatening disease that occurs due to the tearing of intimal layer of aorta resulting in the viii TABLE OF CONTENTS LIST OF TABLES .