Hyperspectral technology offers significant potential for non-invasive monitoring and prediction of morphological parameters in plants. In this study, UV−VIS−NIR−SWIR reflectance hyperspectral data were collected from Nicotiana tabacum L. plants using a spectroradiometer. These plants were grown under different light and gibberellic acid (GA3) concentrations. Through spectroscopy and multivariate analyses, key growth parameters, such as height, leaf area, energy yield, and biomass, were effectively evaluated based on the interaction of light with leaf structures. The shortwave infrared (SWIR) bands, specifically SWIR1 and SWIR2, showed the strongest correlations with these growth parameters. When classifying tobacco plants grown under different GA3 concentrations in greenhouses, artificial intelligence (AI) and machine learning (ML) algorithms were employed, achieving an average accuracy of over 99.1% using neural network (NN) and gradient boosting (GB) algorithms. Among the 34 tested vegetation indices, the photochemical reflectance index (PRI) demonstrated the strongest correlations with all evaluated plant phenotypes. Partial least squares regression (PLSR) models effectively predicted morphological attributes, with R2CV values ranging from 0.81 to 0.87 and RPDP values exceeding 2.09 for all parameters. Based on Pearson’s coefficient XYZ interpolations and HVI algorithms, the NIR−SWIR band combination proved the most effective for predicting height and leaf area, while VIS−NIR was optimal for optimal energy yield, and VIS−VIS was best for predicting biomass. To further corroborate these findings, the SWIR bands for certain morphological characteristic wavelengths selected with s−PLS were most significant for SWIR1 and SWIR2, while i−PLS showed a more uniform distribution in VIS−NIR−SWIR bands. Therefore, SWIR hyperspectral bands provide valuable insights into developing alternative bands for remote sensing measurements to estimate plant morphological parameters. These findings underscore the potential of remote sensing technology for rapid, accurate, and non-invasive monitoring within stationary high-throughput phenotyping systems in greenhouses. These insights align with advancements in digital and precision technology, indicating a promising future for research and innovation in this field.