Cell migration is crucial in a wide variety of biological process like development, homeostasis or tissue regeneration. In particular, the interaction between the extracellular matrix and the cytoskeleton is a recurrent topic, due to its important role in this process. These interactions are built through protein clutches, generally known as focal adhesions or focal contacts. For migratory cells, these focal adhesions together with force generating processes in the cytoskeleton are responsible of the formation of protrusion structures like lamellipodia or filopodia, that determine the cell migration path. This phenomenon has been deeply studied in two-dimensional (2D) cases; however, the knowledge we have in the three-dimensional (3D) case is limited. In this work, we simulate different local extracellular matrix properties in order to unravel the fundamental mechanisms that regulate the formation of cell-matrix adhesions in 3D. We aim to study the mechanical interaction of these biological structures through a three dimensional discrete approach, reproducing the transmitting pattern force between the cytoskeleton and the extracellular matrix and how both parts are interplaying by them. This numerical model provides a discrete analysis of the proteins involved including spatial distribution, interaction between them, and study of the different phenomena, such as protein clutches unbinding or protein unfolding. * Corresponding authorEmail address: jmgaraz@unizar.es (J.M. García-Aznar) November 6, 2014 Keywords: Actin, myosin, focal adhesion, 3D discrete model, extracellular matrix reorganization.
Preprint submitted to Journal of Theoretical Biology
Highlights• A discrete computational model in 3D is proposed for reproducing the focal adhesion building phenomenon.• The proposed model analyze the importance of the alignment between the matrix fiber and the cell protrusion on the size of the adhesion.• The influence of different extracellular matrix properties on the size of the adhesion is also studied.2