2021
DOI: 10.1515/hsz-2020-0392
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Computational prediction of CRISPR-impaired non-coding regulatory regions

Abstract: Genome-wide CRISPR screens are becoming more widespread and allow the simultaneous interrogation of thousands of genomic regions. Although recent progress has been made in the analysis of CRISPR screens, it is still an open problem how to interpret CRISPR mutations in non-coding regions of the genome. Most of the tools concentrate on the interpretation of mutations introduced in gene coding regions. We introduce a computational pipeline that uses epigenomic information about regulatory elements for the interpr… Show more

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Cited by 2 publications
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“…In a cooperation with the lab of Manuel Kaulich, we analyzed CRISPR-induced mutations in the non-coding genome and developed an analysis protocol to identify target genes and to perform functional analyses based on the identified REMs. The work is published as part of the issue Bioinformatics in theory and application of Biological Chemistry with the title Computational prediction of CRISPR-impaired non-coding regulatory regions (Baumgarten et al, 2021). Parts of the text and figures are taken from the publication or similar to it.…”
Section: Application: Computational Prediction Of Crisprimpaired Non-...mentioning
confidence: 99%
“…In a cooperation with the lab of Manuel Kaulich, we analyzed CRISPR-induced mutations in the non-coding genome and developed an analysis protocol to identify target genes and to perform functional analyses based on the identified REMs. The work is published as part of the issue Bioinformatics in theory and application of Biological Chemistry with the title Computational prediction of CRISPR-impaired non-coding regulatory regions (Baumgarten et al, 2021). Parts of the text and figures are taken from the publication or similar to it.…”
Section: Application: Computational Prediction Of Crisprimpaired Non-...mentioning
confidence: 99%