2011
DOI: 10.1016/j.scr.2011.05.005
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Computer-Aided 2D and 3D quantification of human stem cell fate from in vitro samples using Volocity high performance image analysis software

Abstract: Accurate automated cell fate analysis of immunostained human stem cells from 2- and 3-dimensional (2D-3D) images would improve efficiency in the field of stem cell research. Development of an accurate and precise tool that reduces variability and the time needed for human stem cell fate analysis will improve productivity and interpretability of the data across research groups. In this study, we have created protocols for high performance image analysis software Volocity® to classify and quantify cytoplasmic an… Show more

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Cited by 9 publications
(9 citation statements)
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“…In comparison to rodent cells, hNSC require a longer time for in vitro differentiation. Our previous data suggest that a small proportion of hNSC remain uncommitted even after a 14 day in vitro differentiation period [15], however, evaluation of GFAP + cells in combination of stem cell markers Sox2 and Nestin indicates that by this timepoint GFAP expression correlates with astroglial lineage commitment rather than maintenance of neural progenitors [6]. After the last image acquisition at the 14 day timepoint, cells were fixed and triple-immunostained for lineage characterization using astroglial marker GFAP, oligodendroglial maker nuclear Olig2, or neuronal marker Map2 (Fig.…”
Section: Resultsmentioning
confidence: 99%
“…In comparison to rodent cells, hNSC require a longer time for in vitro differentiation. Our previous data suggest that a small proportion of hNSC remain uncommitted even after a 14 day in vitro differentiation period [15], however, evaluation of GFAP + cells in combination of stem cell markers Sox2 and Nestin indicates that by this timepoint GFAP expression correlates with astroglial lineage commitment rather than maintenance of neural progenitors [6]. After the last image acquisition at the 14 day timepoint, cells were fixed and triple-immunostained for lineage characterization using astroglial marker GFAP, oligodendroglial maker nuclear Olig2, or neuronal marker Map2 (Fig.…”
Section: Resultsmentioning
confidence: 99%
“…Fluorescent images of immunostained slides were captured using random sampling on a FluoViewFV10i confocal microscope using a 320 objective, and saved as red, blue, and green channels. Images were merged and quantified using Volocity 5.0 software (28). For all experiments using hNSC, n = 8-10 images per condition per experiment and a minimum of three independent experiments was analyzed.…”
Section: Pmn Viability Analysis By Flow Cytometrymentioning
confidence: 99%
“…Briefly, prefiltered images were imported into Volocity and individual cells were found using intensity-based thresholding and then either excluded or retained based upon fluorescence and size. The software based object (cell) recognition was confirmed by visual observation of Volocity data images by an experienced user as detailed elsewhere (Piltti et al, 2011). Cells that (a) could not be tracked for the full time period, (b) were too close to each other, or (c) dividing were excluded from analysis.…”
Section: Tracking Of Cell Migrationmentioning
confidence: 99%