Biogeochemical cycling of CH 4 was investigated at Lothian Island, one of the relatively pristine islands of Indian Sundarbans and its adjacent Saptamukhi estuary, during June 2010 to December 2012. Intertidal mangrove sediments were highly anoxic and rich in organic carbon. Mean rates of methanogenesis were 3,547 and 48.88 µmol m −3 wet sediment d −1 , for intertidal (up to 25 cm depth) and sub-tidal sediments (first 5 cm depth), respectively. CH 4 in pore-water was 53.4 times more supersaturated than in adjacent estuarine waters. This resulted in significant CH 4 efflux from sediments to estuarine waters-via advective and diffusive transport. About 8.2% of the total CH 4 produced in intertidal mangrove sediments was transported to the adjacent estuary through advective flux, which was 20 times higher than diffusive CH 4 flux. Mean CH 4 concentrations in estuarine surface and sub-surface waters were 69.9 and 56.1 nM, respectively, with a dissolved CH 4 oxidation rate in estuarine surface waters of 20.5 nmol L −1 d −1 . An estimated 0.09 Gg year −1 of CH 4 is released from estuaries of Sundarbans to the regional atmosphere. The mean CH 4 mixing ratio over the forest atmosphere was 2 ppmv. On annual basis, only 2.75% of total supplied CH 4 to the forest atmosphere was transported to the upper atmosphere via biosphere-atmosphere exchange. Mean CH 4 photo-oxidation rate over the forest atmosphere was 3.25 × 10 −9 mg cm −3 d −1 . Using new and previously published data we present for the first time, a CH 4 budget for Sundarbans mangrove ecosystem which in part, revealed the existence of anaerobic CH 4 oxidation in the mangrove sediment column.