Mercury (Hg) contamination is widespread in the Laurentian Great Lakes region and is a serious environmental concern. In anaerobic environments such as lake sediments, mercury is transformed into methylmercury (MeHg) and can biomagnify up the food chain to toxic concentrations. The Great Lakes Fish Monitoring Program (GLFMP), administered by the US EPA Great Lakes National Program Office (GLNPO), aims to monitor temporal trends of mercury in the five Great Lakes using top predator fish as biomonitors. Total Hg (THg) concentrations were measured in Great Lake fish collected between 1999 and 2009. Single factor ANOVA determined that average fish THg concentrations over this time period in the five lakes were significantly different from one another in the order of Superior > Huron > Michigan > Ontario > Erie. By fitting the data to three different models (linear, quadratic, and two-segment piecewise), it was determined that Hg concentrations in top predator fish (lake trout, or walleye in Lake Erie) are currently increasing in Lake Erie and the Apostle Island sampling site in Lake Superior. Significant decreasing trends are evident in Lakes Michigan, Ontario, and the Rockport sampling site in Lake Huron, although all of the lakes exhibit elevated concentrations in fish compared to historic concentrations. As new Hg emission controls are implemented in the US, continued monitoring of Hg in Great Lakes fish will be needed to determine if they influence the current concentrations and trends.