We have developed highly potent synthetic activators of the vertebrate immune system that specifically target the RIG-I receptor. When introduced into mice, a family of short, triphosphorylated Stem Loop RNAs (SLRs) induces a potent interferon response and the activation of specific genes essential for antiviral defense. Using RNAseq, we provide the first in-vivo genome-wide view of the expression networks that are initiated upon RIG-I activation. We observe that SLRs specifically induce type I interferons, subsets of interferon-stimulated genes (ISGs), and cellular remodeling factors. By contrast, poly(I:C), which binds and activates multiple RNA sensors, induces type III interferons and several unique ISGs. The short length (10-14 base pairs) and robust function of SLRs in mice demonstrate that RIG-I forms active signaling complexes without oligomerizing on RNA. These findings demonstrate that SLRs are potent therapeutic and investigative tools for targeted modulation of the innate immune system. RIG-I is an innate immune sensor that plays a key role in recognizing and responding to infection by RNA viruses (1, 2). RIG-I is activated in conditions that introduce a terminal, double-stranded RNA molecule into the cell. These molecules can include viral genomes, replication intermediates, and any other species containing a stable RNA duplex that is terminated with a 5'-triphosphate or diphosphate group (3,4). RIG-I activation by RNA leads to the induction of type I interferon (IFN) genes through the activation of its adaptor molecule, MAVS (5). Another member of the RIG-I-like receptors (RLRs), MDA5, binds to long stretches of double-stranded RNA and similarly triggers type I IFN production through MAVS (6). Type I IFNs induce hundreds of genes, collectively known as IFN-stimulated genes (ISGs), which have a variety of antiviral effector functions (7,8). Both the RNA duplex and 5'-triphosphate moieties are important for specific, high affinity binding and signaling by RIG-I (9-11), and through a series of recent crystal structures and functional studies of RNA recognition by the RIG-I receptor, the molecular basis for these effects has been elucidated (3,12).When appropriately delivered and modulated, RIG-I agonists would be promising tools for application in immuno-oncology (13-16), antiviral prophylaxis (17-20), and vaccine adjuvant development (21). However, all of these applications require a specific and potent RIG-I ligand that is functional in vivo. Previous work has suggested that RIG-I function can be controlled and exploited pharmacologically through stimulation with small, well-defined RNA ligands that are no larger than other therapeutically administered oligonucleotides (9,10,16). Structural studies, quantitative biochemical work, cell-based assays and imaging studies have all established that RIG-I is an "RNA end-capper" that encircles a 10-base-pair RNA duplex as a monomer and forms a network of specific interactions with the terminal base-pair and the 5'triphosphate (3,(10)(11)(12)(22)(23)(24)(25)(...