Many and diverse modifications of the myosin subfragment 1 (S-1) increase (modulate) its ATPase activity, including interaction of this particle with actin; a recent addition to these modifications is the extensive lysine modification of S-1 that seems prerequisite to crystallizing it for structure analysis. In this study we first established kinetically the ATPase modulations induced by various treatments of the myosin S-1 enzyme, and we also measured two properties of the S-1 active site-the affinity with which the site binds (a fluorescent analog of) the enzymatic nucleotide product and the access that a fluorescence quencher has to the bound ADP product-in an effort to get at the mechanism of modulation. Modulations achieved by substituting Ca2+ for the normal Mg2+ cocatalyst or by substituting Cl-for the normal carboxylate anion seem due to the product being held more loosely by the modulated enzyme. In other illustrative modulations (lysine methylation, or alkylation of or transition from neutral pH to pH 9.2) nucleotide product affinity and access to quencher do change, but not in a pattern explained simply by a lifting of product inhibition. Lysine methylation results in weaker binding of nucleotide product.Various modifications of myosin subfragment 1 (S-1) (including complexation with actin) modulate its ATPase rate, but the underlying mechanisms of modulation are unknown. This study looks for attendant active-site changes that may suggest a general mechanism. An immediate stimulus for this study was the S-1 modification reported most recently, the generalized lysine methylation (1) used to prepare myosin crystals for structural studies (2). White and Rayment (3) have reported that such methylation markedly increases the Mg2+-ATPase activity of S-1, in a manner kinetically similar to that produced by attaching a bulky group to 5). Do the seemingly disparate modulations such as those induced by generalized lysine methylation, modification of Cys-707, transition from pH 7.5 to 9.2, and many other agencies (6, 7) share a common feature with one another and perhaps with F-actin binding? Here we have studied three intentionally disparate modulations-methylation, alkylation of Cys-707, and the pH transition. Our efforts centered on two characterizations of the ATPase site, both deriving from an earlier observation (8) that, in the presence of an inoffensive concentration of the collisional fluorescence quencher acrylamide, a fluorescent nucleotide increased its emission upon binding to (being engulfed by) the ATPase site. By using this effect one can obtain the binding constant of the nucleotide to the site.Further, as Rosenfeld and Taylor (9) later showed, it is also possible to extract "Stern-Volmer quenching constants" of the nucleotide interacting with the site, thus measuring the access of the quencher to the bound nucleotide. These two measures-binding constant and Stern-Volmer constantexpress the physical state of the ATPase site and can be measured before ("control") and after modulating t...