20In Streptococcus mutans, the alternative sigma factor ComX controls entry into genetic 21 competence. Competence signaling peptide (CSP) induces bimodal expression of 22 comX, with only a fraction of cells in the population becoming transformable. Curiously, 23 bimodal comX activation in response to CSP is affected by peptides in the growth 24 medium and by carbohydrate source. CSP elicits bimodal expression of comX in media 25 rich in small peptides, but in defined media lacking small peptides CSP induces no 26 response in comX. In addition, growth on certain sugars other than glucose increases 27 the proportion of the population that activates comX in response to CSP, relative to 28 growth on glucose. By investigating the connection between media and bimodal comX 29 expression, we find evidence for two mechanisms that modulate transcriptional positive 30 feedback in the ComRS system, which is the origin of comX bimodality. We find that the 31 endopeptidase PepO suppresses the ComRS feedback loop, most likely by degrading 32 the intracellular XIP/ComS signal. Deletion of pepO eliminates bimodality in comX, 33 leading to a unimodal comX response to CSP in defined and complex media. We also 34 find that CSP upregulates comR in a carbohydrate source-dependent fashion, providing 35 an additional stimulus to the ComRS feedback system. Our data provide mechanistic 36 insight into how CSP regulates the bistable competence circuit and explain the puzzle of 37 growth medium-dependence in S. mutans competence regulation. 38 39 40 41 42 43The Gram-positive bacterium Streptococcus mutans inhabits human oral biofilms 44 and is a primary etiologic agent of dental caries (Loesche, 1986). The ability of S. 45 mutans to colonize the oral cavity and compete with commensal organisms is 46 associated with the com regulon. The com (competence) regulon controls entry into 47 genetic competence, a transient state during which cells are able to internalize DNA 48 from the environment (Shanker; Federle, 2017). In S. mutans the com regulon is linked 49 to tolerance of environmental stress, including heat, oxidative stresses, pH and 50 carbohydrate availability (Qi et al., 2004;Ahn et al., 2005; Ahn et al., 2006; Senadheera, 51 M. D. et al., 2007; Tremblay et al., 2009; Senadheera, D. B. et al., 2012). It is also 52 involved in bacteriocin production and lysis, which are important in interspecies 53 competition (Shanker; Federle, 2017), and in biofilm formation and stability (Li et al., 54 2002). There are many unresolved questions in the study of S. mutans competence, 55 especially in regard to how the com regulon integrates diverse environmental cues, 56 such as the presence of different signal peptides or nutrients or the composition of the 57 growth medium, in order to drive different phenotypic outputs in downstream regulated 58 genes (Hagen; Son, 2017). 59 The quorum sensing peptide CSP (competence stimulating peptide) (Li et al., 60 2002) is a primary input to the S. mutans competence pathway (Fig. 1). CSP is d...