C–O–H–N–S-bearing fluids are known as one of the most challenging geochemical systems due to scarcity of available experimental data. H2S-rich fluid systems were recognized in a wide array of world-class mineral deposits and hydrocarbon reservoirs. Here we report on a nature of low-temperature (T ≥ −192 °C) phase transitions observed in natural CH4–H2S–CO2–N2–H2O fluid inclusions, which are modeled as closed thermodynamic systems and thus serve as natural micro-laboratories representative of the C–O–H–N–S system. For the first time, we document solid–solid H2S (α ↔ β ↔ γ) transitions, complex clathrates and structural transformations of solid state H2S in natural inclusion gas mixtures. The new data on Raman spectroscopic features and a complete sequence of phase transition temperatures in the gas mixtures contribute to scientific advancements in fluid geochemistry. Enhanced understanding of the phase equilibria in the C–O–H–N–S system is a prerequisite for conscientious estimation of P-T-V-X properties, necessary to model the geologic evolution of hydrocarbon and mineral systems. Our findings are a driver for the future research expeditions to extraterrestrial H2S-rich planetary systems owing to their low temperature environments.