Manure samples were collected from 16 organic (ORG) and 9 low-input conventional (LIC) Dutch dairy farms during August and September 2004 to determine the prevalence of the STEC virulence genes stx 1 (encoding Shiga toxin 1), stx 2 (encoding Shiga toxin 2), and eaeA (encoding intimin), as well as the rfbE gene, which is specific for Escherichia coli O157. The rfbE gene was present at 52% of the farms. The prevalence of rfbE was higher at ORG farms (61%) than at LIC farms (36%), but this was not significant. Relatively more LIC farms were positive for all Shiga toxin-producing E. coli (STEC) virulence genes eaeA, stx 1 , and stx 2 , which form a potentially highly virulent combination. Species richness of Enterobacteriaceae, as determined by DGGE, was significantly lower in manure positive for rfbE. Survival of a green fluorescent protein-expressing E. coli O157:H7 strain was studied in the manure from all farms from which samples were obtained and was modeled by a biphasic decline model. The time needed to reach the detection limit was predominantly determined by the level of native coliforms and the pH (both negative relationships). Initial decline was faster for ORG manure but leveled off earlier, resulting in longer survival than in LIC manure. Although the nonlinear decline curve could theoretically be explained as the cumulative distribution of an underlying distribution of decline kinetics, it is proposed that the observed nonlinear biphasic pattern of the survival curve is the result of changing nutrient status of the manure over time (and thereby changing competition pressure), instead of the presence of subpopulations differing in the level of resistance.Shiga-toxin producing Escherichia coli (STEC) is an important group of zoonotic human pathogens, with E. coli O157 being the best known and most studied serotype (10). STEC strains are generally carried asymptomatically by cattle and shed in their feces, which in turn may serve as a means of maintenance and spread of these pathogens among cattle herds (47). Since the reported increase in food-borne disease associated with the consumption of fresh vegetables (51, 54), the potential contamination of vegetable crops that are grown in fields enriched with manure has raised increasing concern (18, 29, 52). Understanding on-farm survival and spread of human pathogens is of utmost importance in preventing the spread of this organism to the environment, groundwater, food, and crops and subsequently back to cattle.A considerable body of literature exists on the prevalence of STEC on cattle farms and statistically associated management factors which could be used for potential intervention strategies to reduce shedding of these pathogens (2, 53, 57). However, these studies are not unambiguous and have resulted in the identification of only a very few risk factors, like season and cattle age, which are ubiquitous. The direction of influence of the majority of the management practices like feeding regimen and housing conditions remains unclear and is under debate.D...