We identified a unique amino acid of NS2A 113 , phenylalanine, that affects the efficient propagation of two Japanese encephalitis virus strains, JaTH160 and JaOArS982, in neuroblastoma Neuro-2a cells but not in cell lines of extraneural origin. This amino acid did not affect viral loads in the brain or survival curves in mice. These findings suggest that virus propagation in vitro may not reflect the level of virus neuroinvasiveness in vivo. J apanese encephalitis virus (JEV) causes approximately 30,000 to 50,000 cases and 10,000 to 15,000 deaths in Asian countries annually (1, 2). JEV belongs to the family Flaviviridae, genus Flavivirus (3, 4), whose genomic RNA encodes one polyprotein, cleaved into three structural (C, prM, and E) and seven nonstructural (NS1, NS2A, NS2B, NS3, NS4A, NS4B, and NS5) proteins (5). The clinical symptoms of JE vary from mild to severe and include a nonspecific febrile illness, meningitis, encephalitis, and meningoencephalitis (6, 7). The mechanism of severe central nervous system (CNS) disease is not fully understood.To evaluate disease pathogenesis and virulence, mice have been employed as an infection model. Several viral and host factors affect disease severity during JEV infection. We previously suggested that the host response, resulting in immunopathological effects, contributes to fatal infections (8). Furthermore, we also demonstrated that the JaOArS982 and JaTH160 strains of JEV exhibited different virulence in mice (8). Therefore, a geneticsbased comparison between these strains may provide an effective approach to identify viral factors contributing to severe disease.Our previous results showed that following subcutaneous infection with 10 4 PFU of JaTH160, mice showed 100% mortality, whereas JaOArS982 caused approximately 30% mortality in mice (8). We first constructed infectious cDNA clones harboring fulllength genes of JaOArS982 and JaTH160 and produced infectious viruses S982-IC and JaTH-IC from the respective cDNAs (9). In the present study, subcutaneous infection with 10 4 PFU of S982-IC and JaTH-IC viruses caused 40% and 100% mortality, respectively, in C57BL/6j (B6) mice (Japan SLC Cooperation, Japan CLEA Cooperation) (Fig. 1A), indicating that both JaTH-IC and S982-IC viruses possessed virulence potentials similar to those of their parent JaOArS982 and JaTH160 viruses. Our animal experimental protocols were approved by the Animal Care and Use Committee, Nagasaki University (approval numbers 091130-2-7/0912080807-9 and 100723-1-3/1008050873-3).Our previous data showed that viral loads in the CNS of JaTH160-infected mice were significantly higher than those of JaOArS982-infected mice (8). This raised the possibility that virus propagation in neuronal cells is different between JaTH160 and