2008
DOI: 10.1103/physreva.78.012320
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Construction of model Hamiltonians for adiabatic quantum computation and its application to finding low-energy conformations of lattice protein models

Abstract: In this report, we explore the use of a quantum optimization algorithm for obtaining low energy conformations of protein models. We discuss mappings between protein models and optimization variables, which are in turn mapped to a system of coupled quantum bits. General strategies are given for constructing Hamiltonians to be used to solve optimization problems of physical/chemical/biological interest via quantum computation by adiabatic evolution. As an example, we implement the Hamiltonian corresponding to th… Show more

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Cited by 111 publications
(100 citation statements)
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“…In order to get a clue of how well ASP will perform for systems in which we have only a very poor initial guess of the exact wave function, we also numerically simulated ASP with initial Hamiltonian of the following form [21] where σ i x denotes Pauli x matrix acting on ith qubit. Such a Hamiltonian has a non-degenerate ground state equal to the homogeneous superposition of all the computational basis states and thus does not presume any information about the true wave function.…”
Section: A Computational Detailsmentioning
confidence: 99%
See 1 more Smart Citation
“…In order to get a clue of how well ASP will perform for systems in which we have only a very poor initial guess of the exact wave function, we also numerically simulated ASP with initial Hamiltonian of the following form [21] where σ i x denotes Pauli x matrix acting on ith qubit. Such a Hamiltonian has a non-degenerate ground state equal to the homogeneous superposition of all the computational basis states and thus does not presume any information about the true wave function.…”
Section: A Computational Detailsmentioning
confidence: 99%
“…calculations of excited states [17], quantum chemical dynamics [18], calculations * libor.veis@jh-inst.cas.cz † jiri.pittner@jh-inst.cas.cz of molecular properties [19], or calculations of relativistic systems [20] were published. Application of adiabatic quantum computing for finding low energy conformations of proteins was described in [21,22].…”
Section: Introductionmentioning
confidence: 99%
“…This finite-temperature, open system model is expected to more accurately describe the dynamics underlying the QPU [8]. Nevertheless, several experimental tests of the D-Wave QPU have been carried out including applications of machine learning, binary classification, protein folding, graph analysis, and network analysis [9][10][11][12][13][14][15][16][17][18]. Demonstrations of enhanced performance using the D-Wave QPU have been found only for a few selected and highly contrived problem instances [19][20][21].…”
Section: Introductionmentioning
confidence: 99%
“…20 Typically this is done iteratively, with an N-body interaction being reduced to a two-body interaction using a complete graph on N logical bits and (N−2) ancilla bits. 23 This necessitates (N−1) (2N−3) two-body couplers.…”
Section: Introductionmentioning
confidence: 99%