Contiguous Genome Sequence of
            <i>Frankia</i>
            sp. Strain ArI3, Isolated from Root Nodules of Alnus rubra Bong

Bell, Callum J.; Sena, Johnny A.; Gifford, Isaac; Berry, Alison M.

doi:10.1128/mra.00800-21

Microbiol Resour Announc

2021

DOI: 10.1128/mra.00800-21

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Contiguous Genome Sequence of Frankia sp. Strain ArI3, Isolated from Root Nodules of Alnus rubra Bong

Callum J. Bell

Johnny A. Sena

Isaac Gifford

et al.

Abstract: We report the genome sequence of Frankia sp. strain ArI3, recovered as a single contig from one run of the Oxford Nanopore Technologies (ONT) MinION instrument. The genome has a G+C content of 72%, is 7,541,222 bp long, and contains 5,427 predicted protein-coding genes.

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2024

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A root nodule microbiome sequencing data set from red alder (Alnus rubra Bong.)

Bell,

Sena,

Fajardo

et al. 2024

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There have been frequent reports of more than one strain of the nitrogen-fixing symbiont, Frankia , in the same root nodule of plants in the genus Alnus , but quantitative assessments of their relative contributions have not been made to date. Neither has the diversity of other microbes, having potential functional roles in symbiosis, been systematically evaluated. Alnus rubra root nodule microbiota were studied using Illumina short read sequencing and kmer-based read classification. Single end 76 bp sequencing was done to a median depth of 96 million reads per sample. Reads were assigned to taxa using KrakenUniq, with taxon abundances being estimated using its companion program Bracken. This was the first high resolution study of Alnus root nodules using next generation sequencing (NGS), quantifying multiple Cluster 1 A Frankia strains in single nodules, and in some cases, a Cluster 4 strain. Root nodules were found to contain diverse bacteria, including several genera containing species known to have growth-promoting effects. Evidence was found for partitioning of some bacterial strains in older versus younger lobes.

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A root nodule microbiome sequencing data set from red alder (Alnus rubra Bong.)

Bell,

Sena,

Fajardo

et al. 2024

Sci Data

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show abstract

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Contiguous Genome Sequence of Frankia sp. Strain ArI3, Isolated from Root Nodules of Alnus rubra Bong

Abstract: We report the genome sequence of Frankia sp. strain ArI3, recovered as a single contig from one run of the Oxford Nanopore Technologies (ONT) MinION instrument. The genome has a G+C content of 72%, is 7,541,222 bp long, and contains 5,427 predicted protein-coding genes.

Cited by 1 publication

References 20 publications

A root nodule microbiome sequencing data set from red alder (Alnus rubra Bong.)

A root nodule microbiome sequencing data set from red alder (Alnus rubra Bong.)

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