Two functionally important DNA sequence elements in centromeres of the fission yeast Schizosaccharomyces pombe are the centromeric central core and the K-type repeat. Both of these DNA elements show internal functional redundancy that is not correlated with a conserved DNA sequence. Specific, but degenerate, sequences in these elements are bound in vitro by the S. pombe DNA-binding proteins Abp1p (also called Cbp1p) and Cbhp, which are related to the mammalian centromere DNA-binding protein CENP-B. In this study, we determined that Abp1p binds to at least one of its target sequences within S. pombe centromere II central core (cc2) DNA with an affinity (K s ؍ 7 ؋ 10 9 M
؊1) higher than those of other known centromere DNA-binding proteins for their cognate targets. In vivo, epitope-tagged Cbhp associated with centromeric K repeat chromatin, as well as with noncentromeric regions. Like abp1 ؉ /cbp1 ؉ , we found that cbh ؉ is not essential in fission yeast, but a strain carrying deletions of both genes (⌬abp1 ⌬cbh) is extremely compromised in growth rate and morphology and missegregates chromosomes at very high frequency. The synergism between the two null mutations suggests that these proteins perform redundant functions in S. pombe chromosome segregation. In vitro assays with cell extracts with these proteins depleted allowed the specific assignments of several binding sites for them within cc2 and the K-type repeat. Redundancy observed at the centromere DNA level appears to be reflected at the protein level, as no single member of the CENP-B-related protein family is essential for proper chromosome segregation in fission yeast. The relevance of these findings to mammalian centromeres is discussed.The faithful inheritance of a cell's genetic blueprint depends on flawless chromosome segregation at each cell division. Mistakes that result in gain or loss of chromosomes (aneuploidy) are associated with death and disease in humans. Aneuploidy is estimated to be the cause of 25% of spontaneous abortions, is the leading cause of mental retardation, and is associated with certain types of cancers, including most colorectal tumors (9,26,36). Proper segregation in mitosis and meiosis is governed by the centromere, a multifunctional region on each chromosome that is the site of sister chromatid cohesion, kinetochore assembly, and spindle attachment and is subject to cell cycle surveillance (reviewed in references 1 and 16) and epigenetic regulation (reviewed in references 13 and 34). Despite the functional similarities of centromeres in various organisms, wide variation is seen in the underlying centromeric DNA sequences that nucleate assembly of the kinetochore. Not surprisingly, the centromere appears to be a target of species divergence.With the exception of the budding yeasts, which utilize small "point" centromeres (Ͻ0.2 kb), other organisms as diverse as fission yeast (Schizosaccharomyces pombe), Drosophila, and humans contain large "regional" centromeres (40 to 5,000 kb) that are characterized by the presence of re...