The quantum yield and kinetics of decay of cob(II)alamin formed by pulsed-laser photolysis of adenosylcobalamin (AdoCbl) in coenzyme B 12 (AdoCbl)-dependent ethanolamine ammonia-lyase (EAL) from Salmonella typhimurium have been studied on the 10 -7 -10 -1 s time scale at 295 K by using transient ultraviolet-visible absorption spectroscopy. The aim is to probe the mechanism of formation and stabilization of the cob(II)alamin-5′-deoxyadenosyl radical pair, which is a key intermediate in EAL catalysis, and the influence of substrate binding on this process. Substrate binding is required for cobalt-carbon bond cleavage in the native system. Photolysis of AdoCbl in EAL leads to a quantum yield at 10 -7 s for cob(II)alamin of 0.08 ±0.01, which is 3-fold less than for AdoCbl in aqueous solution (0.23 ±0.01). The protein binding site therefore suppresses photoproduct radical pair formation. Three photoproduct states, P f , P s , and P c , are identified in holo-EAL by the different cob(II)alamin decay kinetics (subscripts denote fast, slow, and constant, respectively). These states have the following first-order decay rate constants and quantum yields: P f (2.2×10 3 s -1 ; 0.02), P s (4.2×10 2 s -1 ; 0.01), and P c (constant amplitude, no recombination; 0.05). Binding of the substrate analog, (S)-1-amino-2-propanol, to EAL eliminates the P f state, and lowers the quantum yield of P c (0.03) relative to P s (0.01), but does not significantly change the quantum yield or decay rate constant of P s , relative to holo-EAL. The substrate analog thus influences the quantum yield at 10 -7 s by changing the cage escape rate from the geminate cob(II)alamin-5′-deoxyadenosyl radical pair state. However, the predicted substrate analog binding-induced increase in the quantum yield is not observed. It is proposed that the substrate analog does not induce the radical pair stabilizing changes in the protein that are characteristic of true substrates.Coenzyme B 12 -dependent enzymes catalyze radical mediated rearrangement reactions in both bacteria and mammals (1-3). The first step in the catalytic cycle is the homolytic cleavage of the cobalt-carbon (Co-C) bond in coenzyme B 12 (adenosylcobalamin, AdoCbl; Figure 1), which results in the formation of the cob(II)alamin-5′-deoxyadenosyl radical pair. The C5′ radical center of the 5′-deoxyadenosyl moiety then migrates over 5-6 Å (4,5) to abstract a † The project described was supported by Grant Number R01DK054514 from the National Institute of Diabetes and Digestive and Kidney Diseases. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institute of Diabetes and Digestive and Kidney Diseases or the National Institutes of Health. * Corresponding Author: Kurt Warncke Department of Physics N201 Mathematics and Science Center 400 Dowman Drive Emory University Atlanta, Georgia 30322-2430 kwarncke@physics.emory.edu Phone: 404-727-2975 Fax: 404-727-0873 SUPPORTING INFORMATION AVAILABLE Monoexponential plus consta...